Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09510 1001 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G22650 973 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G35580 966 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT4G34860 918 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT1G72000 894 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1) AT5G22510 594 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 575 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G06500 561 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT3G05820 558 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016938 [exp] 1078 / 0 AT4G09510 985 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10014824 [exp] 1078 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10009441 [exp] 976 / 0 AT4G09510 831 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10042390 [exp] 902 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10026284 [exp] 900 / 0 AT4G34860 979 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10033144 [exp] 888 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 884 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10043375 [exp] 603 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 600 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G110800 [exp] 1078 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.019G082000 [exp] 1061 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.009G129000 [exp] 916 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.004G167500 [exp] 911 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.005G239400 [exp] 898 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.002G173600 [exp] 745 / 0 AT4G09510 741 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.004G186500 [exp] 596 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G101500 [exp] 593 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.008G024100 [exp] 592 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 590 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10006078 pacid=23147741 polypeptide=Lus10006078 locus=Lus10006078.g ID=Lus10006078.BGIv1.0 annot-version=v1.0 ATGGATGGACCAAAGGACCCTGTAGGACTCAGAAATGTGAGCTCATCGTGCTCCATATCAGAGATGGACGACTTTGATCTATCGCGTCTCCTCGACAAGC CGAGGCTGAACATCGAGAGGAAAAGATCGTTCGACGAGAGGTCGTTAAGCGAGCTCTCTGTTGGGATGGGAAGAGGAATGGATAACTATGAGAACACGTA CTCTCCCGGAGGGAGGTCCGTGTTCGACAGTCCGGCTTCATCAACTAGGAACTCGTTCGAACCCCATCCTATGGTGGCGGACGCTTGGGAAGCTCTCCGG AGATCGATCGTGTACTTTAGAGGCCAGCCGGTTGGAACTATTGCTGCTGTTGACCATGCCTCCGAAGAGGTTTTGAACTATGATCAGGTTTTTGTTCGAG ATTTCGTGCCAAGTGCGCTTGCATTTCTCATGAATGGAGAGCCAGACATAGTAAAGAACTTCCTCTTGAAGACATTGCATCTTCAAGGATGGGAGAAGAG GATAGATAGATTCAAGCTTGGGGAAGGAGCTATGCCAGCCAGTTTCAAAGTCCTCCACGACCCTGATAGAAAGACAGATACTTTAATCGCAGATTTCGGA GAGAGTGCAATCGGCAGGGTTGCTCCTGTCGATTCCGGATTCTGGTGGATCATCCTGCTACGTGCTTACACGAAGTCCACAGGAGATATGTCACTTGCAG AGACACCGGAATGCCAGAAGGGGATGAGACTCATCCTGTCCCTGTGTTTGTCCGAAGGGTTCGATACGTTCCCCACCTTGCTTTGTGCCGATGGATGCTC CATGATCGATCGTCGGATGGGAATATACGGTTACCCCATCGAGATCCAAGCATTGTTCTTCATGTCGTTGAGGTCAGCATTGTCGATGCTCAAGCACGAT ACAGAAGGGAACGAGTTCATCGAGAGGATCGTGAAGCGATTGCATGCGTTGAGCTTCCACATGAGGAGCTACTTCTGGCTAGACTTCCAGCAGCTGAACG ACGTGTATCGTTACAAGACGGAGGAGTACTCTCACACCGCGGTGAACAAGTTCAACGTGATCCCGGACTCGATCCCCGAGTGGGTGTTTGAGTTCATGCC AACTCGAGGTGGATACTTCATAGGCAATGTGAGTCCGGCGAGGATGGACTTCCGGTGGTTCGCCCTGGGAAACTGTTTTGCCATCCTGTCTTCTCTAGCC ACTCCGGAACAGTCGGTGGCAATCATGGACCTCATCGAAGCTCGATGGGAGGAGCTAGTCGGAGAAATGCCTTTGAAGATCGCTTACCCTGCGATCGAGA GCCACGAATGGAGGATCGTTACAGGGTGCGATCCGAAGAATACTAGGTGGAGTTACCACAATGGAGGTTCTTGGCCAGTGCTCTTGTGGATGCTGACGGC TGCCTGCATCAAGACCGGAAGGCCACAGATTGCTCGAAAAGCAATCGATCTCGCCGAGACAAGGCTGCTCAAGGACAGCTGGCCGGAGTACTACGATGGC ACAAAGGGTAGGTACATCGGGAAGCAGGCGAGGAAGTACCAGACGTGGTCGATCGCAGGGTATCTGGTGGCAAAGATGATGCTTGAGGATCCTTCGCATT TGGGGATGATCTCGCTTGAAGAGGACAAGCAAATGAAGCCTGTGCTCAAGAGATCATCTTCTTGGACTTGCTGA
AA sequence Show only first row Show all	>Lus10006078 pacid=23147741 polypeptide=Lus10006078 locus=Lus10006078.g ID=Lus10006078.BGIv1.0 annot-version=v1.0 MDGPKDPVGLRNVSSSCSISEMDDFDLSRLLDKPRLNIERKRSFDERSLSELSVGMGRGMDNYENTYSPGGRSVFDSPASSTRNSFEPHPMVADAWEALR RSIVYFRGQPVGTIAAVDHASEEVLNYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLHLQGWEKRIDRFKLGEGAMPASFKVLHDPDRKTDTLIADFG ESAIGRVAPVDSGFWWIILLRAYTKSTGDMSLAETPECQKGMRLILSLCLSEGFDTFPTLLCADGCSMIDRRMGIYGYPIEIQALFFMSLRSALSMLKHD TEGNEFIERIVKRLHALSFHMRSYFWLDFQQLNDVYRYKTEEYSHTAVNKFNVIPDSIPEWVFEFMPTRGGYFIGNVSPARMDFRWFALGNCFAILSSLA TPEQSVAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARKAIDLAETRLLKDSWPEYYDG TKGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVLKRSSSWTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10006078 [exp]	0	1
AT5G22050			Protein kinase superfamily pro...		Lus10013365 [exp]	6.0	0.7937
AT1G07650			Leucine-rich repeat transmembr...		Lus10031374 [exp]	7.3	0.8126
AT1G79630			Protein phosphatase 2C family ...		Lus10000402 [exp]	13.1	0.7699
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	15.5	0.7513
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10011085 [exp]	30.0	0.7112
AT5G62960			unknown protein		Lus10032130 [exp]	31.1	0.7732
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10031431 [exp]	32.7	0.7738
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10007698 [exp]	48.1	0.7651
AT4G24480			Protein kinase superfamily pro...		Lus10028168 [exp]	77.2	0.6827
AT2G01690			ARM repeat superfamily protein...		Lus10001587 [exp]	79.8	0.7244

Compare expression of checked genes

Lus10006078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.