Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35530 468 / 8e-151 DEAD/DEAH box RNA helicase family protein (.1.2) AT3G03300 57 / 3e-08 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT5G26742 53 / 6e-07 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT1G16280 52 / 1e-06 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT3G09620 51 / 3e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G22330 50 / 3e-06 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT5G60990 49 / 5e-06 DEA(D/H)-box RNA helicase family protein (.1) AT5G20320 50 / 6e-06 DCL4, ATDCL4 dicer-like 4 (.1.2) AT1G54270 48 / 1e-05 EIF4A-2 eif4a-2 (.1.2) AT3G22310 48 / 2e-05 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009444 [exp] 600 / 0 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10006089 [exp] 373 / 1e-122 AT1G35530 251 / 2e-72 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10036447 [exp] 60 / 6e-09 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10006326 [exp] 54 / 4e-07 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10029596 [exp] 54 / 4e-07 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10037527 [exp] 53 / 6e-07 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038975 [exp] 52 / 1e-06 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027268 [exp] 52 / 1e-06 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 52 / 1e-06 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G109600 [exp] 533 / 4e-175 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.008G075900 [exp] 61 / 2e-09 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.010G181400 [exp] 58 / 2e-08 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.006G188800 [exp] 57 / 4e-08 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.002G194600 [exp] 53 / 5e-07 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G000100 [exp] 53 / 7e-07 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.006G024100 [exp] 52 / 7e-07 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.008G084700 [exp] 51 / 1e-06 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.016G023100 [exp] 51 / 2e-06 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.016G013900 [exp] 50 / 3e-06 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006082 pacid=23147735 polypeptide=Lus10006082 locus=Lus10006082.g ID=Lus10006082.BGIv1.0 annot-version=v1.0 ATGAACTGTTCAGCAAAGCAGCAGGCTGTGCAGCAGATTATTGACAACTTACAGATATCAACACTGGAATATCGTGATGAAAGCGATCCAGATGTCAGCC CTTATGTCCACAACAGAAAGATTGAATTGATTCAGGTACCTATGGGAAAGGATGCTGTTGACTTAAATAAACTGCTCTTGGATGTGATGCGCCCTTATGC TTCTAAGCTTTCTGCTGCCGGACTCCTGCCGAATAGAGACTTTCAAATTTTAAGTCCCCCGGATTTCCTCAATTCACGGCTTGAATTTCGCAAGGCACCC CCACTGAACCTTCCAGAGTCTAAGATTAAAGATATCGAAGCTTGTTTCGGATGTCTTATCACTCTTTATCACATACGGAAGCTACTTTCAAGCCACGGGA TAAGGCCAGCATACGAGATGCTGGAAGAAAAGTTGAAACAAGGGTTTTTGCGGCTGATGAGCAGAAATGAAGATATTAAAAAAGTGAAGCTCATTATGGA ACAAAGCTTGAGCCATGGTGCACCTAGTTCCAAGTTATCGAAAATGTTGGAAGTACTTGTTAACCATTTCAGAAAAACCTTGAAAGGTCAATCTCAGAAG GTCCAACAAGCTATCTTGCAGAAATTTCGAGCTGGAGGGTACAATGTGATTGTCGCCACATCGATCGGTGAAGAGGGCCTGGATATAATGGAAGTTGATC TTGTTATATGTTTTGATGCTAACGTATCACCGCTCAGAATGATTCAGCGCATGGGGAGAACTGGACGGAAAAACGATGGAAGAGTTGATATCCTTCAAAA TAGGATTCCCCACATTTTCAAACCAGAAGTCCAGTATGTTCAGATGGAGATTGAACAATACATTCCTCGTGGAAAGAAAGTAATCGATGGCAGCGACTTC CGTACACCTGGATTCACTAAACAACTAACTGCTACCGAGAGTGCTGTGGTTGCAAAGTATTTCCGGAATTCAAATTGGACACCGTCTCTTATTGTCTTTC CAAGTGTCCAGACATATCCCTCCCGCGTTCATCAAGTAATGCACTCTTCCAGAACAGAGATGCTGATAGACGCAATGCAAAATCTGGAGCCACTGTTAGT TCCTCCTGTGGATACCAGAGGTTTCTCTGTCAAGGATGATGATACATTTTGCGAAAAGGGTGTGGGCATTGAAAAAGTTGATTATGAAGATGATGATAAA GAAGTGCCATTTTCAGGTAAAAGGGAGCAGCTTGGCATCATCAACGACTTCATAGAAGAGGAAGCCGAGGTCTCGCCAAATGGTGAGGCATCTGACGACG AGATAGTCGATGGAGATGAAAATTCATATGAACAGTGTTTCATAGATGACAGAATGAACCCCACACAACCAAGTAGAGTGGACATGATGGCAATATACAG GCGTTCTTTGCTCAGTCAATCGCCAATGCTGAGGGAATCCCCTTCAGCAGCAGCAGCTATTTCTACTACTCCAGATTGTGACTCTTCCATCAGCTGCAAA CACAACTCAGGATCTTCTTCTTCAGCCGTTCCTTGCTCAACAAAGAAAAGGAAGTTAGGGGGAGGATCTGTTCTTCCCATTCTCAACTTAGAGCAAGAAT TCGCAGCCGAGGCAACGAACAATAATAATGGTGCTGCTGATGTCGATAGCAACGAGGATATGTTTTACGACGATCAGTTCTTTGCCACCCTTGATGCACT GGAAGCACGAGCCTCGTCTGTTCTTCAGCAGAAGAACAACTCAAAGCCTGATCTACTGCCTCCTCCATCGTCAGTCCTGAATGACTCGGATCTCGATGGC TTGCCTACGTTTGATCTCGGGTTTTAG
AA sequence Show only first row Show all	>Lus10006082 pacid=23147735 polypeptide=Lus10006082 locus=Lus10006082.g ID=Lus10006082.BGIv1.0 annot-version=v1.0 MNCSAKQQAVQQIIDNLQISTLEYRDESDPDVSPYVHNRKIELIQVPMGKDAVDLNKLLLDVMRPYASKLSAAGLLPNRDFQILSPPDFLNSRLEFRKAP PLNLPESKIKDIEACFGCLITLYHIRKLLSSHGIRPAYEMLEEKLKQGFLRLMSRNEDIKKVKLIMEQSLSHGAPSSKLSKMLEVLVNHFRKTLKGQSQK VQQAILQKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNDGRVDILQNRIPHIFKPEVQYVQMEIEQYIPRGKKVIDGSDF RTPGFTKQLTATESAVVAKYFRNSNWTPSLIVFPSVQTYPSRVHQVMHSSRTEMLIDAMQNLEPLLVPPVDTRGFSVKDDDTFCEKGVGIEKVDYEDDDK EVPFSGKREQLGIINDFIEEEAEVSPNGEASDDEIVDGDENSYEQCFIDDRMNPTQPSRVDMMAIYRRSLLSQSPMLRESPSAAAAISTTPDCDSSISCK HNSGSSSSAVPCSTKKRKLGGGSVLPILNLEQEFAAEATNNNNGAADVDSNEDMFYDDQFFATLDALEARASSVLQQKNNSKPDLLPPPSSVLNDSDLDG LPTFDLGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10006082 [exp]	0	1
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	5.0	0.8972
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	10.9	0.8882
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10035111 [exp]	13.0	0.8216
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	14.1	0.8833
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10005874 [exp]	14.7	0.8851
AT5G65360			Histone superfamily protein (....		Lus10012744 [exp]	17.7	0.8830
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	20.3	0.8763
AT3G27360			Histone superfamily protein (....		Lus10031821 [exp]	20.6	0.8777
AT4G01270			RING/U-box superfamily protein...		Lus10018817 [exp]	24.0	0.8746
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012906 [exp]	24.5	0.8410

Compare expression of checked genes

Lus10006082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.