Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19890 844 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G65560 258 / 2e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 248 / 4e-72 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 236 / 5e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G01110 231 / 8e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 230 / 2e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 228 / 2e-64 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 226 / 4e-64 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT3G22470 219 / 2e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64100 217 / 4e-61 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000428 [exp] 563 / 0 AT4G19890 407 / 1e-138 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10009444 [exp] 479 / 1e-149 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10042529 [exp] 262 / 5e-75 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 258 / 3e-74 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 261 / 5e-74 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 254 / 9e-73 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 239 / 1e-68 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 236 / 7e-67 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 234 / 8e-67 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121700 [exp] 966 / 0 AT4G19890 923 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G105600 [exp] 251 / 5e-73 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 248 / 6e-73 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 243 / 5e-71 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 244 / 7e-71 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 239 / 1e-69 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G234500 [exp] 241 / 3e-69 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 237 / 4e-69 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 234 / 6e-68 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G236800 [exp] 239 / 8e-68 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006083 pacid=23147757 polypeptide=Lus10006083 locus=Lus10006083.g ID=Lus10006083.BGIv1.0 annot-version=v1.0 ATGGCGTATTGTCTGGTTCCTGGTTTACGCTATCTCAAGAACAAGCTTCCTCCTTTACCTGCATCTCCACTAGCTACTTCCATTTGCCGATTCTCTGATC GATCAGTTTCTTTATTTACCCGCGCGGATGAGGATTATGATGACAGGGTCAACAGTTCATCGATGGAAGTACAATCTCTGTCTAGGTCGATTTGTGCAAT CGTAAATGAATCGTTCTGGCATGGGAAGAAGTCGTCACCTTTAGAGCTTGGGATAAGCCCGGAGGATTTGAATCAAGAGGAAGCGATCACGGTTGTCGCT TTGCTAGCGGAGGAAGAAGGTTCGATGGTGGCAATGAGCTTCTTTCATTGGGCTATCGGTTTCCCCAAATTCAGGCATTTCATGAGATTCTACATCGTTG CTGCTACTTCATTTGTTGCTAACAGGAATTTGGATCGAGCTCATGAAGTGATGCGGTGTATGGTGAGGAGTTTTGCCGAGGTTGGGAAGCTTAAGGAAGC TGTGAATATGGTTATTGAGATGGGGAACCAAGGATTGGTACTTAGCTCCAGAACTTTGAATTATGTTGTGGAAATTGCTTGTGAGATTGGGATGATTGAG TATGCTGAGGGCGTGTTTGACGAAATGCGTGTGAGAGATGTTCGTCCTGATTGCACGAGCTATAAGTTGATGGCTATGGCGTATTGTAGAGCTGGGAAGG TTTCGGTTGCGGAGAGGTGGCTGAGTGACATGGTTGAGAGAGGGTTTCTTGTTGATAACGCTACTTGCAGTTTGGTGATTACAAAGTTCTGTGACGAAGG GTTTGGGAATCGGGCTTACTGGTACTTCAATAAGTGGATTGAGATGGGTCTGAAGCCGAATTTGATCAACTTTACTGCTCTGATTAATGGCCTCTGCAAG AGGGGGAGCATTAAGCAGGCATTCGAGATGTTGGAGGAGATGGTGAAGAAAGGGTGGAAGCCGAATGTCTACACTCATACTGTGTTGATCGATGGACTGT GTAAGAAAGGATGGACTGAGAAGGCATTTCGGTTGTTCTTGAAGCTTGTTAGGAGCGATAATTACAAGCCGAATGTGCATACTTATACCTCCATGATTCA TGGATATTGCCAAGAGAATAAGTTGAACAGAGCTGAGATGTTATTTAGCAGAATGAAGGAACAAGGTTTGGTACCCAACACGAATTCGTATACTTGTCTC GTCAATGGATACTCTAAAGCTGGTAACTTCGATAAGGCGTTTGAGTTGATGGATGTGATGGTGACGGAAGGTTTTCCTCCTAACGTGTTTACTTATAATT CTCTTGTAAATGGATTGTGCAAAAAGCAGAGGTTTTGGGAGGCTTATGAACTGCTCAAGAAGGGAGTCGAAAATGGATTACAGGCTGATAAGGTTACTTA TACCATTCTAATGTGTGAGCATTTCCGGCAGGCTAATTACAAGTGTGGCATTGCGATGTTCAGTAAGATATTTAAAAATGGGTTCGAACATGATATGCAT ACGTATAATGCACTGATTGCTGCTAGCTGCAAGCAGAAAAAGATGGACGAAAGTGAGAAGTTCTTAGAAGAAGCTACTAGTCTTGGTTTAGTTCCTACCA AGGAAACATACACTTCCATGATTTGTGGATATTGTCGTGATGGAAAGGTCAATTTGGCTGTGAAATTTTTCAACAGGATGATGAATGATCGTCGCTGTTC ACCGGATAGTTTTACTTATGGAGCTCTAATCAGTGGGCTCTGCAAAGAGTCCAAGCTGGACGATGCTCGTCGGTTGTATGACACAATGATCGACCGTGGT CTGTACCCGTCCGAAGTAAGTCGGGTGACATTAGCGTATGAGTACTTCAAGCAGGATGATGCTGCAACTGCAATAATCATCATGGAGCGCCTGGACAAAA AACTATGGATTCGAACTGCTACCACGTTGATTAGGAAGCTTTGCAGTGAGAAGAAAGTCGGGATTGCATCACTGCTGTTTCATAAATTGCTCGACAAGGA TTCTAACATGGTCGATCGTGTGACTTTGACTGCATTTAGAACAGCTTGCTATGAGAGTGAGAAGTTTGCTTTAGTCGCTGAGTTGTCGAAGAGAATCTCT GGTTAG
AA sequence Show only first row Show all	>Lus10006083 pacid=23147757 polypeptide=Lus10006083 locus=Lus10006083.g ID=Lus10006083.BGIv1.0 annot-version=v1.0 MAYCLVPGLRYLKNKLPPLPASPLATSICRFSDRSVSLFTRADEDYDDRVNSSSMEVQSLSRSICAIVNESFWHGKKSSPLELGISPEDLNQEEAITVVA LLAEEEGSMVAMSFFHWAIGFPKFRHFMRFYIVAATSFVANRNLDRAHEVMRCMVRSFAEVGKLKEAVNMVIEMGNQGLVLSSRTLNYVVEIACEIGMIE YAEGVFDEMRVRDVRPDCTSYKLMAMAYCRAGKVSVAERWLSDMVERGFLVDNATCSLVITKFCDEGFGNRAYWYFNKWIEMGLKPNLINFTALINGLCK RGSIKQAFEMLEEMVKKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTSMIHGYCQENKLNRAEMLFSRMKEQGLVPNTNSYTCL VNGYSKAGNFDKAFELMDVMVTEGFPPNVFTYNSLVNGLCKKQRFWEAYELLKKGVENGLQADKVTYTILMCEHFRQANYKCGIAMFSKIFKNGFEHDMH TYNALIAASCKQKKMDESEKFLEEATSLGLVPTKETYTSMICGYCRDGKVNLAVKFFNRMMNDRRCSPDSFTYGALISGLCKESKLDDARRLYDTMIDRG LYPSEVSRVTLAYEYFKQDDAATAIIIMERLDKKLWIRTATTLIRKLCSEKKVGIASLLFHKLLDKDSNMVDRVTLTAFRTACYESEKFALVAELSKRIS G

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10006083 [exp]	0	1
AT2G32760			unknown protein		Lus10022575 [exp]	17.2	0.5924
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10008825 [exp]	21.3	0.5612
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	26.8	0.5570
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	34.9	0.5315
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10034419 [exp]	62.5	0.4667
AT2G34930			disease resistance family prot...		Lus10016338 [exp]	63.5	0.4893
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10031927 [exp]	66.9	0.4839
AT2G18850			SET domain-containing protein ...		Lus10025463 [exp]	73.4	0.5052
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10022182 [exp]	136.7	0.4183
AT2G34930			disease resistance family prot...		Lus10016340 [exp]	235.1	0.4087

Compare expression of checked genes

Lus10006083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.