Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35470 99 / 5e-22 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 94 / 1e-20 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09310 57 / 1e-08 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 57 / 1e-08 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09250 57 / 1e-08 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009316 [exp] 114 / 5e-28 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009451 [exp] 115 / 1e-27 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009445 [exp] 109 / 1e-26 AT1G35470 188 / 4e-56 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10001544 [exp] 108 / 4e-25 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020190 [exp] 100 / 2e-23 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020191 [exp] 53 / 8e-08 AT1G35470 69 / 2e-13 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 54 / 2e-07 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10002729 [exp] 49 / 3e-07 AT1G35470 81 / 8e-19 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080800 [exp] 104 / 4e-24 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.013G108400 [exp] 103 / 1e-23 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.002G123800 [exp] 44 / 0.0002 AT4G06536 174 / 3e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Potri.014G025000 [exp] 42 / 0.0006 AT4G06536 173 / 6e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10006084 pacid=23147725 polypeptide=Lus10006084 locus=Lus10006084.g ID=Lus10006084.BGIv1.0 annot-version=v1.0 ATGACAAGCTCAGAGAGGCCGACGAAACTGGTTGATGCGTTGAGCAGCGTTGTGGTTGCGGAGGATAATCTTTCCGTCAAGTACAACCGTGCCAATCCGC GAACCTGGTTCTTCTACGCATGCACGATGGCGGACAAGCCCGCACCTAGTAATGTGAAGGTGTATTACTTCGAGATGCGGGTTAAGAGTAGAGGACCCGG AGGACGCGGCGATTGTACGATAGGTTTCGTGAAGAAAGGGTTTGACTTGTTGAAACAACCCGGGAGATCTGCTGGTAGCATTGGATATTGTAGCAATGGA AAATTGTATTACGACAATCGTGACTTTGGAGAGCCATTGGGTCCAACATTTACAACCGGCAGCGTAGTTGGTGCTGGTATCGACTATGCTTCAAATGAGT TCTTTTTCACGGTCGACGTTAATTTCGGCCAAAAACCCTTTGTATATGACATCAAGAAGGAGATTCCCTATTCCGAATACCTTAATTTCAAATTGCCTAC TACGACTTCTAAGGAGAACGGGAAGAAGCTGTTGGAAGAGAAGCTACAACAGCCGGAGAAGAGCGAGCCATGGCTGAAGAAGACATTCGAAGAAAAGGAA AAAGAAGTGGCTGATTTGAAACCGTCTAATATCGCTTTTGAGGAAAGCGAGAAAAAGTCGTTGGAGGAGAAGCTGGAAATGTTGGAGAAGAACGAGTCTT TCCTAAAGAAGGCACTCGAAGAAAAGGAAAAAGAGGTGGCTGATTTGAAACCGTCTAATATCGGTTCTGAGGAAAGCGGGAAGAAGCTGTTGGAGGAGAA GCTGCAAAAGTTAGAGAAGAGCGAGTCGTCTCTAAAGAAGGCACTCGAAGAAAAGGAAAAAGAGGTGGCTGATTTGAAATCGTCTGATACCGCCTTTGAG GAAAGCGGGAAGAAGCTGTTGGAGGAGAAGCTGCAAAAGCTGGAAAAGAGCGAGTCGTCTCTAAAGAAGGCACTCGAAGAAAAGGAAAAAGAGGTGGCTG ATTTGAAATCGTTTGATACCGCTTTTGAGGAAAGCGGGAAGAAATTGTTGGAGGAGAAGCTGGAAAAGCTGGAAAAGAGCGAGTCGTCTCTAAAGAAGGC ACTCGAAGAAAAGAAAAATGAGGTGGCTGATTTGAAATCGTGCAATGCCTGTACGAAACTTTTGGAGGAGAAGCTGGAAAAGCTAAAGAAGAGCGAGTCG TTGCAGAAGAAGACACTCGAAAAAAAAGATACGAAGATGGTTAATCTAAAGACTGTCGTCGTAGGTGAAAAACCTAAGGAGGATGGTGATCCTGATGAGT GTGTTCGCCATTGTTGTAGATGGAAGAAGATACTCGAGAAAAAGGATAAGGAATTGACTTGTTTTAAGGATGCTTTCAAAGAGCTGCTTAATTAA
AA sequence Show only first row Show all	>Lus10006084 pacid=23147725 polypeptide=Lus10006084 locus=Lus10006084.g ID=Lus10006084.BGIv1.0 annot-version=v1.0 MTSSERPTKLVDALSSVVVAEDNLSVKYNRANPRTWFFYACTMADKPAPSNVKVYYFEMRVKSRGPGGRGDCTIGFVKKGFDLLKQPGRSAGSIGYCSNG KLYYDNRDFGEPLGPTFTTGSVVGAGIDYASNEFFFTVDVNFGQKPFVYDIKKEIPYSEYLNFKLPTTTSKENGKKLLEEKLQQPEKSEPWLKKTFEEKE KEVADLKPSNIAFEESEKKSLEEKLEMLEKNESFLKKALEEKEKEVADLKPSNIGSEESGKKLLEEKLQKLEKSESSLKKALEEKEKEVADLKSSDTAFE ESGKKLLEEKLQKLEKSESSLKKALEEKEKEVADLKSFDTAFEESGKKLLEEKLEKLEKSESSLKKALEEKKNEVADLKSCNACTKLLEEKLEKLKKSES LQKKTLEKKDTKMVNLKTVVVGEKPKEDGDPDECVRHCCRWKKILEKKDKELTCFKDAFKELLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10006084 [exp]	0	1
AT2G23970			Class I glutamine amidotransfe...		Lus10019964 [exp]	1.7	0.9659
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10023624 [exp]	3.9	0.9454
AT4G16400			unknown protein		Lus10038791 [exp]	4.7	0.9563
AT1G23850			unknown protein		Lus10032153 [exp]	5.5	0.9415
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	6.0	0.9440
AT4G37445			unknown protein		Lus10001408 [exp]	7.1	0.9561
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10009762 [exp]	7.2	0.9197
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	8.5	0.9498
AT1G47271			Cystathionine beta-synthase (C...		Lus10001964 [exp]	9.4	0.9419
					Lus10019472 [exp]	11.2	0.9420

Compare expression of checked genes

Lus10006084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.