Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22760 72 / 1e-14 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 70 / 5e-14 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G37850 67 / 5e-13 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22770 54 / 1e-08 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09820 44 / 6e-05 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G16430 43 / 9e-05 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G01260 43 / 0.0001 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G32640 43 / 0.0001 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G63650 43 / 0.0001 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G17880 42 / 0.0003 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019247 [exp] 239 / 3e-78 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011578 [exp] 191 / 3e-60 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003488 [exp] 72 / 2e-14 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 70 / 1e-13 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 62 / 4e-11 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 61 / 7e-11 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020503 [exp] 60 / 2e-10 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000037 [exp] 44 / 5e-05 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 44 / 7e-05 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009400 [exp] 71 / 3e-14 AT4G37850 130 / 1e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G287200 [exp] 62 / 2e-11 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G081400 [exp] 62 / 3e-11 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G095250 [exp] 57 / 2e-09 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 45 / 2e-05 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 45 / 4e-05 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 44 / 4e-05 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G221100 [exp] 44 / 6e-05 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G128000 [exp] 43 / 9e-05 AT5G41315 561 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 43 / 0.0001 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006085 pacid=23147758 polypeptide=Lus10006085 locus=Lus10006085.g ID=Lus10006085.BGIv1.0 annot-version=v1.0 ATGGAAGTTCTTCAGACTGAATGGATGCCTGAGTTGGGAATGGAGGATCCGTCTTTCAATTATCAGTACCAATCCCCCTTCAACTTCTCGATCGACGACT TTGATTTCGATCACCACTCGTTTACGCCCGCCAACTGTTTGATGAAATTTCCCAACGAAGAAGCTGCTGTTAATAATCCTCCTCTCATAATTTCTCCACA GAGTTTCACCACCACTACTTCTCAGTCCAGTGATATGAACAACAACAGTAGACCTGCCAAGATTCCCAAGACGACGAACAATTCGAGTAGAGCTTCTCCT CCTTCGTCGTCTTCCTCGCCTTACTCGTGCATTATCTCGTTCGATAGCTCTAGCAGCACCGATTCGGTTCCAGCTGTTCCTCAAAAGCCACCGAGATCCT CCTATCCTCCAGCAGCCGTTATTAAGCCCGAGTATTCATCGATCGAAAACGGTCTTCAGTATGGCTGCTCGGTGTTGAATAATGCTACTACTAGCCATGG CACTAAAAGACCTGCAGCTGCAATGAGTAGGAGTCCGATTAGTGCGCAGGATCATGTCATGGCTGAGAGGAAGCGTCGCGAGAAGCTCAGCGAACGGTTC ATCGCTCTCTCAGCTGTCGTTCCTGGCCTCAAGAAGTGCCTAACAATCCTAATTCTATGGAAAACTCGATGGGTCATAGAATCAAGTCAAATCTTGAGTT AA
AA sequence Show only first row Show all	>Lus10006085 pacid=23147758 polypeptide=Lus10006085 locus=Lus10006085.g ID=Lus10006085.BGIv1.0 annot-version=v1.0 MEVLQTEWMPELGMEDPSFNYQYQSPFNFSIDDFDFDHHSFTPANCLMKFPNEEAAVNNPPLIISPQSFTTTTSQSSDMNNNSRPAKIPKTTNNSSRASP PSSSSSPYSCIISFDSSSSTDSVPAVPQKPPRSSYPPAAVIKPEYSSIENGLQYGCSVLNNATTSHGTKRPAAAMSRSPISAQDHVMAERKRREKLSERF IALSAVVPGLKKCLTILILWKTRWVIESSQILS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22760	bHLH	bHLH019	basic helix-loop-helix (bHLH) ...		Lus10006085 [exp]	0	1
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	1.0	0.9782
AT4G28290			unknown protein		Lus10018592 [exp]	3.9	0.8349
AT5G17680			disease resistance protein (TI...		Lus10041060 [exp]	7.7	0.8346
					Lus10022773 [exp]	10.3	0.8364
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10013832 [exp]	12.8	0.8344
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	14.1	0.8086
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	14.5	0.8303
AT1G32928			unknown protein		Lus10033221 [exp]	15.2	0.8039
AT3G23160			Protein of unknown function (D...		Lus10022201 [exp]	15.7	0.7025
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	15.7	0.8001

Compare expression of checked genes

Lus10006085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.