Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006087 pacid=23147761 polypeptide=Lus10006087 locus=Lus10006087.g ID=Lus10006087.BGIv1.0 annot-version=v1.0 ATGGATATTCCGGAGGTTGGAAATCAAGAAGAACGGGAGATGACGCGTAATTTACAAAGCTGGTTGAAGCGACTTAAGCCGGAGGATTATGAGAAACAAA GCGACAATGCAACTGCAACTGACGAAGATACCCATCAGATAGAGGAAATTAAGAAGGGAATTGGGGCAAGACCCTGGTCAGAATCAATCGACAATGATCG AGCTTCTTTGAGCGAGAAACTTCGATTTTCTTTGCATCAGGACTGGAGCGTAAGAGTGTTGTCCGAGAAATCCCAAGGGATTCTAAGGGGCATTTTACTC GACTTTGCGCGTCTCCAAATGATGGATAAAGTGCATGGCTATATCAATACATACCATATTCGAGTCTCAAGCCTGACGATAGGTGATCACACATCTTGGA CTGGGATGCTGATCCCATCTGAGTTAAGCCCACCTGCAGGACAGACTCCATTTGATGATATCACCGACCTCTACTCGCTATTCCAAGAATTTCGTACAGC AGCAGTTGACGGAGGGGAAGCACTTGAAGACCTGAATTCTCTTATAAATGACTTGTCGTGTCCTAGAGACATTGAGAACATGTTTAACATTTATGTGCAT CCTTCTACGATGAGCATCTCAAAGAAGATGGATCTAATTTTTGGAGCTTTTGAATTGTCCAAGGGGTATGAACTCAATTCTGACTGTTCGAAAGCAGCCT TGATTCGTTTGTTAATACGCAATTCGACAGCAATTGGAGGAGCATCGATCCATCAGACTTGGGTAAAAACATTGCAAACTCTTCCAGCTGGGTCTATATA TGCTCAATCGTGGAGTAGGCTGAAAGCCGACTTGCTCAAGGGAGATGCGAAAAAGGACCCAATTAATCAAATGGGTCATGACGAGAAATATTGGCTACAT CCATGGCACATTCTGATATATATAAGGGGCACACTCGATCACCAGAGAGTTTTGCCAGAACGTCGATATGAAGTGATGAGGGATCTATATGTTCTGTTTC CTACTATTTATCAAGCCTTGGTGAATCGTAATACGAAATATTCAGCCATAACTTTAATGGCTACTGAAGGCACTCCACTTTATCAATTGGTGGAAAGATA TGGTAAAGTTGGAGTTAGTTGTTTGTTGTATGCCCTAATTGTTTGTTGA
AA sequence Show only first row Show all	>Lus10006087 pacid=23147761 polypeptide=Lus10006087 locus=Lus10006087.g ID=Lus10006087.BGIv1.0 annot-version=v1.0 MDIPEVGNQEEREMTRNLQSWLKRLKPEDYEKQSDNATATDEDTHQIEEIKKGIGARPWSESIDNDRASLSEKLRFSLHQDWSVRVLSEKSQGILRGILL DFARLQMMDKVHGYINTYHIRVSSLTIGDHTSWTGMLIPSELSPPAGQTPFDDITDLYSLFQEFRTAAVDGGEALEDLNSLINDLSCPRDIENMFNIYVH PSTMSISKKMDLIFGAFELSKGYELNSDCSKAALIRLLIRNSTAIGGASIHQTWVKTLQTLPAGSIYAQSWSRLKADLLKGDAKKDPINQMGHDEKYWLH PWHILIYIRGTLDHQRVLPERRYEVMRDLYVLFPTIYQALVNRNTKYSAITLMATEGTPLYQLVERYGKVGVSCLLYALIVC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006087 [exp]	0	1
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	1.4	0.9447
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	4.0	0.9436
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	4.2	0.9433
AT2G44270		ROL5	repressor of lrx1 (.1.2)		Lus10009739 [exp]	4.9	0.9411
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	6.9	0.9389
AT5G59210			myosin heavy chain-related (.1...		Lus10016491 [exp]	7.1	0.9412
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036324 [exp]	8.2	0.9417
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	9.5	0.9323
AT3G53270			Small nuclear RNA activating c...		Lus10024665 [exp]	11.1	0.9164
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	12.1	0.9391

Compare expression of checked genes

Lus10006087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.