Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41880 285 / 1e-93 POLA4, POLA3 DNA primases;DNA primases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009444 [exp] 287 / 8e-88 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10000294 [exp] 217 / 2e-68 AT5G41880 173 / 4e-50 DNA primases;DNA primases (.1) Lus10006089 [exp] 82 / 5e-17 AT1G35530 251 / 2e-72 DEAD/DEAH box RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G104700 [exp] 323 / 1e-108 AT5G41880 651 / 0.0 DNA primases;DNA primases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0243 [flax] [poplar] AEP PF01896 [flax] [poplar] DNA_primase_S DNA primase small subunit
Representative CDS sequence Show only first row Show all	>Lus10006088 pacid=23147743 polypeptide=Lus10006088 locus=Lus10006088.g ID=Lus10006088.BGIv1.0 annot-version=v1.0 ATGGCGATGGAAGAAGCGGTCGATGGGAGGGATGACATGGTAATCGATGGGCAGAATGTTGATCAGGCCGTCCAAAATGGATTCAGCCCGAATTTCCTCA GACTGTACTACGCAAAACTATTCCCTTCTGGTGATTTCTTCAAATGGTTGTCCTATGGGAATGATGGAAAGCATCCTGCTTGTGATAAATCTTACTTTGC CAGGAGGGAGTTTTTGTGTGTGTGGAGAATGACATCTATTCCCGGAGCTGATGTTTGCCTGGACTGCTGGCCCTTGATGACTGCTGCCATCAAAGTTATA GACACTTCACTCAGAGATGACTTTGGTTTCAACCACATTCTCTGGGTTTACAGTGGCCGACGTGGTGTGCATTGTTGGGTTTCTGATGGGAAAGCAAGAA GGTTGACTAATGAACAGAGAGCATCCGTTGCTGATTACTTCCGCGTATACAAGGGTAGTGAGAACAGTAACAAAAAAGTTTCTTTGACTGGCCATGCTCT TCATCCTTTCTTGGTGAGATCCTACTCGGAAGTACTAAAGGATTTATTTGAGAACCAATTGCTCTCCGGTCATCAAATTTTCTCAACCGAAGACAAATGC GAGAAGATTCTAGAAATGATTCCCGATGAATCTGTTGCTGCGGAGCTTCGAGGTAGGTGGCAGAACAGTAAAAGGACGTGTGTTTGTGTACCGATAGACC CAGCCCGGTGCCACGAATTCGATCCTACAGCAGTCCCCACACTTTCACAGCTGCTACAAGATCTCAACTCTGGAGGAATGGGCGAGGAAGGAGACAATGA CTGGGACAGGACCTCACTCAGAGAATCTGTCAGGTTTTTCACATCCTCGTTCTTGGAACCTCTTCTGAAATCTTGCAAGGATGACATAGAAGGTTCATAC AATGCGAAACTGCAGCAGTCGAAGAACTCGCTGAGTTGGTAG
AA sequence Show only first row Show all	>Lus10006088 pacid=23147743 polypeptide=Lus10006088 locus=Lus10006088.g ID=Lus10006088.BGIv1.0 annot-version=v1.0 MAMEEAVDGRDDMVIDGQNVDQAVQNGFSPNFLRLYYAKLFPSGDFFKWLSYGNDGKHPACDKSYFARREFLCVWRMTSIPGADVCLDCWPLMTAAIKVI DTSLRDDFGFNHILWVYSGRRGVHCWVSDGKARRLTNEQRASVADYFRVYKGSENSNKKVSLTGHALHPFLVRSYSEVLKDLFENQLLSGHQIFSTEDKC EKILEMIPDESVAAELRGRWQNSKRTCVCVPIDPARCHEFDPTAVPTLSQLLQDLNSGGMGEEGDNDWDRTSLRESVRFFTSSFLEPLLKSCKDDIEGSY NAKLQQSKNSLSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Lus10006088 [exp]	0	1
					Lus10017572 [exp]	1.4	0.8615
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10006089 [exp]	2.0	0.8447
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	4.0	0.8594
AT5G09220		AAP2	amino acid permease 2 (.1)		Lus10006026 [exp]	10.1	0.7290
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	12.0	0.8261
AT4G36980			unknown protein		Lus10009350 [exp]	12.8	0.8261
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	13.6	0.8195
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	15.5	0.8056
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10034963 [exp]	17.3	0.7676
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	17.3	0.8550

Compare expression of checked genes

Lus10006088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.