Plant FIBer expression Database

Lus10006089 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G35530 236 / 2e-67 DEAD/DEAH box RNA helicase family protein (.1.2)
AT5G41880 178 / 4e-50 POLA4, POLA3 DNA primases;DNA primases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006082
[exp]
360 / 2e-117 AT1G35530 469 / 3e-151 DEAD/DEAH box RNA helicase family protein (.1.2)
Lus10009444
[exp]
254 / 2e-73 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Lus10000294
[exp]
98 / 5e-22 AT5G41880 173 / 4e-50 DNA primases;DNA primases (.1)
Lus10006088
[exp]
81 / 2e-16 AT5G41880 284 / 2e-93 DNA primases;DNA primases (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G109600
[exp]
283 / 1e-83 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Potri.003G104700
[exp]
196 / 1e-56 AT5G41880 651 / 0.0 DNA primases;DNA primases (.1)
Potri.013G110200
[exp]
100 / 2e-23 AT1G35530 0 / 1 DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0243 AEP PF01896 DNA_primase_S DNA primase small subunit
Representative CDS sequence
>Lus10006089 pacid=23147729 polypeptide=Lus10006089 locus=Lus10006089.g ID=Lus10006089.BGIv1.0 annot-version=v1.0
ATGGCGTCTGCAAATCCTCTCCTAATCAACGACGACGACGACGATGTTAGTTCCCGCTTTTTTCTTCCCTCTCTTTATTTTTCACTTTTCTTCTGCTCAT
TTCTGTTGATTCGTTTTCTGATCAGGAGTTCGATTGGGAGGCAGCAGTTAAGGAAATCGACGTGGTCTGCGAGAATGCGATTCCCTCCACCTCCTCATTC
AACCCAAACCGATCGGAGAATCGTGGTTCGGTTGCTGGGAGTGATTCGAATTGTTCCAATTCTTTCGTTACCAATGGGAAGCGGCCTTAGGTTCATTGGG
AAGCCGAAGACGTTGGTTGTTGAGGAAACTACAGATGCTTGGGTTCCGGGAGTGGGAGTGAGCTGTGTTGAGATTGATTCCGAGGCAGCTAAAACTTGGA
TATACCCAGTGAATGTTCCACTTCGTGAATACCAGCTGGCCATAACAAGGACAGCATTGTTTTCAAATACATTGGTTGCATTGCCTACTGGACTTGGGAA
GACACTTATTGCTGCAGTTGTCATGTCTTCAGCAAAGCAGCAGGCTGTGCAGCAGATTATTGACAACTTACAGATATCAACACTGGAATATCGTGATGAA
AGCGATCCAGATGTCAGCCCTTATGTCCACAACAGAAAGATTGAATTGATTCAGGTACCTATGGGAAAAGATGCTGTTGACTTAAATAAACTGCTCTTGG
ATGTGATGCGCCCTTATGCTTCTAAGCTTTCTGCTGCCGGACTCCTGCCGAATAGAGACTTTCAAACTTTAAGTCCTCCGGATTTCCTCAATTCACGGCT
TGAATTTCGCAAGGCACCCCCACTGAACCTTCCAGAGTCTAAGATTAAAGAAATCGAAGCTTGTTTTGGATGTCTTATCACTCTTTATCACACACGGAAG
CTACTTTCAAGCCACGGGATAAGGCCAGCATACGAAATGCTGGAAGAAAAGTTGAAACAAGGGTTTTTGAGGCTGATGAGCAGAGATGAAGATATTAAAA
AAGTGAAGCTCATTATGGAACAAAGCTTGAGCCATGGTGCACCTAGTTCCAAGTTATCGAAACTGTTGGAAGTACTTGTTAACCATTTCACTGTTGCTGC
GGAGCTTCGAGGTAGGTGGCAGAACAGTAAAAGGTCATCTGGTTTGAGAGATGACATTAACATTTTACGATGGGAGCAGCTAAAGCACACTCTACAATCT
GGAAGACACAAGGCACAAGGCCTGCGTAGGTGTGTTAAAGAAACTGTCTTCTCTTTTTCCTATCCTATGATTGATATGGAGGTCTCCAAACACATGAACC
ACTTGCTGAAAGCACCGTTCTGTGTTCATCCAAAAACCGGACGTGTTTGTGTATCGATAGACCTAGCCCATTGCCACGAATTTGATCCTACAGCAGTTCC
AAAACTTACACAGCTGCTACAAGAACTCAACTCCGGAGGAATGGGCGAAGCAGGAGACAATGGACCTCACTCAGAGAATCCGTCAAGGTTTTTCAGATCC
TCGTTCTTGGAGCCTTTTTATACTCTTCCTGATTGCAGGATGAGATGGAGGGTGCGTACAATTCGAAACTGCTGCAGTCGAAGAACTCGCTGA
AA sequence
>Lus10006089 pacid=23147729 polypeptide=Lus10006089 locus=Lus10006089.g ID=Lus10006089.BGIv1.0 annot-version=v1.0
MASANPLLINDDDDDVSSRFFLPSLYFSLFFCSFLLIRFLIRSSIGRQQLRKSTWSARMRFPPPPHSTQTDRRIVVRLLGVIRIVPILSLPMGSGLRFIG
KPKTLVVEETTDAWVPGVGVSCVEIDSEAAKTWIYPVNVPLREYQLAITRTALFSNTLVALPTGLGKTLIAAVVMSSAKQQAVQQIIDNLQISTLEYRDE
SDPDVSPYVHNRKIELIQVPMGKDAVDLNKLLLDVMRPYASKLSAAGLLPNRDFQTLSPPDFLNSRLEFRKAPPLNLPESKIKEIEACFGCLITLYHTRK
LLSSHGIRPAYEMLEEKLKQGFLRLMSRDEDIKKVKLIMEQSLSHGAPSSKLSKLLEVLVNHFTVAAELRGRWQNSKRSSGLRDDINILRWEQLKHTLQS
GRHKAQGLRRCVKETVFSFSYPMIDMEVSKHMNHLLKAPFCVHPKTGRVCVSIDLAHCHEFDPTAVPKLTQLLQELNSGGMGEAGDNGPHSENPSRFFRS
SFLEPFYTLPDCRMRWRVRTIRNCCSRRTR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G35530 DEAD/DEAH box RNA helicase fam... Lus10006089
[exp]
0 1
AT5G41880 POLA4, POLA3 DNA primases;DNA primases (.1) Lus10006088
[exp]
2.0 0.8447
AT1G33980 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.... Lus10003510
[exp]
15.2 0.7972
Lus10017572
[exp]
21.4 0.7757
AT1G79750 ATNADP-ME4 Arabidopsis thaliana NADP-mali... Lus10034963
[exp]
23.7 0.7198
Lus10033536
[exp]
26.5 0.7206
AT5G55100 SWAP (Suppressor-of-White-APri... Lus10043105
[exp]
28.2 0.7686
AT1G05180 AXR1 AUXIN RESISTANT 1, NAD(P)-bind... Lus10031562
[exp]
28.5 0.7721
AT1G09030 CCAAT NF-YB4 "nuclear factor Y, subunit B4"... Lus10029908
[exp]
30.0 0.6982
AT5G14850 Alg9-like mannosyltransferase ... Lus10034759
[exp]
33.5 0.7298
AT2G17020 F-box/RNI-like superfamily pro... Lus10022651
[exp]
35.5 0.7072

Lus10006089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.