Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01830 744 / 0 ARM repeat superfamily protein (.1) AT1G29340 380 / 5e-122 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G46510 270 / 6e-81 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G60190 265 / 5e-79 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT3G54850 260 / 1e-77 ATPUB14 plant U-box 14 (.1) AT5G42340 243 / 7e-71 PUB15 Plant U-Box 15 (.1) AT1G10560 228 / 6e-65 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1) AT1G71020 222 / 9e-65 ARM repeat superfamily protein (.1.2) AT1G23030 224 / 3e-64 PUB11 ARM repeat superfamily protein (.1) AT2G28830 222 / 1e-61 AtPUB12 PLANT U-BOX 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025244 [exp] 1307 / 0 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10007317 [exp] 420 / 2e-137 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10007511 [exp] 379 / 7e-122 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 362 / 1e-115 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10029163 [exp] 298 / 3e-91 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10013001 [exp] 278 / 7e-84 AT1G60190 562 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10030628 [exp] 259 / 1e-76 AT1G60190 553 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10016565 [exp] 249 / 3e-73 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 248 / 1e-72 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107600 [exp] 943 / 0 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.016G134000 [exp] 922 / 0 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.011G071400 [exp] 423 / 1e-138 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.004G061800 [exp] 413 / 5e-135 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.008G071600 [exp] 364 / 2e-116 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G185900 [exp] 350 / 6e-111 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.012G078900 [exp] 309 / 2e-95 AT1G60190 513 / 3e-174 plant U-box 19, ARM repeat superfamily protein (.1) Potri.015G074200 [exp] 293 / 3e-89 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 263 / 9e-79 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 259 / 4e-77 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10006090 pacid=23174788 polypeptide=Lus10006090 locus=Lus10006090.g ID=Lus10006090.BGIv1.0 annot-version=v1.0 ATGGTCCAATCCATGACAGTTTCCCCGAGAGCAATCTTCCCGCCGCGGAAGCGGCGCCCTTCCGCCGGAGCCTTCATCCCACCCAATTTCGCCGACCAGA AGCTCGTCCAGTCTCTCCTCATCCTATCCCAAGAAATCTCCTCCATCCAGCCTTTCCAATTCCTCCTCAGGCGGAATTCCCAATCCATAATTCGCAAGAC CAAGCTCCTCTCCATCCTCTTCGACGAGGTCATCCGGAATCCAATCCTTATCCTCTCCCCGACGCTGCTCTGCTTCGAAGAAATGTACATACTTCTCCAG AGAATCAGAACTCTAATCGAGGACTGCTCCAACGGCAGCAAGATGTGGCTGCTTATGCAGATCGAGTCCGTCGCCAACGGATTTCACGAACTCACCGTTG AATTGTCAACTCTGTTGGACATCTTCCCGGTCAACGAGGTTGACCTCTCGGAAGACGTTCAGGAACTTGTTGTCTTGATCAGGAAGCAGTGCTCCTTGGT CAAGCCGCATCTAGATCCCACCGATTGTAATCTCCGGCGTGAAGTACTCACCATGCTTGATCGGATCAAGAGAGAGATCGTCCCCGATCATTCCAAGTTA TTAGCGATATTTGACCAAACCGGGTTGCAGACCGCCGCCAGGTGTACAGACGAGATCGAGTGTTTGGAAGACGAGGTTCAGAATCAGACAGATGAGAAAT CCAAATCGGAGGTTATCGCTTTGATCGGGCTCGTCCGATACGCCAAGTGCGTTCTCTACGGCGCGTCGAGCCCAGACTCCGATGGGCAGCGGCGTAATAT GACGTCGTCGTCAGCGGAGGCGATCAACAATATACCGCCGGATTTCCGGTGCCCGATTAGCTTAGACTTGATGCGGGACCCGGTTGTCGTGGCGACGGGA CAGACGTACGATCGCGAGTCTATCAGTTTGTGGATTGAATCCGGGCATAACACGTGTCCAAAGACAGGTCAGAGCTTGGCCCACACGAACCTCATCCCTA ACCGAGCTTTGAAGAACCTGATAAGCATGTGGTGCCGTGAGCAAAAGATACCGTTCGAAGCGACGGAAAATACTCAAAGAAGTAACGGCGTTATCCCGAA CAAAGCAGCCATGGAGGCTACGAGGATGACGGTGTCGTTTTTGACGAAGGAGCTCTCCGGTTCGCAGTCAATGGAAGCTGCTAACGGTGTCGTTTACGAG CTTCGTGCGCTGGCGAAGACAAACTCTGACAGCCGATCCTTCATCTCCGAAGCTGGAGCGATACCTCTATTGATTCGGTACCTAGGTTCGGATATTGGCT CGGTGCTCCCGAACCTCCAAGTCAATGCCGTAACAACTATTCTCAATCTATCAATTCTCGAAGCAAACAAGACCCAAATCATGGAGACCGACGGAGCACT CAACGGAATTATCGAAGTACTCCGATCCGGCGCCACGTGGGAGGCGAAGGGAAACGCGGCGGCGACCATATTCAGCTTATCCGGCATTAACTCGTACAGG AAGCGGCTAGGAAGGAAGAATCGGGTAATTAAGGGATTGATGGATTTAGCTCAACTTGGGCCGAATTCATCAAAACGAGACGCATTGGTTGCGATTCTGA CTTTAGCCGGAGACAGAGATACCGTCGGGAAGTTAATCGAAGCAGGTGTGGTGGAGATTGTTACCGGAGTATTGGATACGCTTCCGGAGGAAGCGGCGAC GATACTTGAAGTCGTCGTCAAGAAAGGCGGATTGTCTGCAATCGCCGCGGTGTACAACAAGATTAAGAAATTGAGCGTGTTGTTGAGGGAAGGATCGGAA ACTTCCCGGGAAAGCGCCGCCGCTACTCTGGTGACGATTTGTCGGAAAGGTGGGTCGGAGATGGTTGCGGAGCTGGCCGCAATGCCCGGAATCGAGAGGA TAATCTGGGAATTGATGGGTACGGGAACAGTTAGGGCGAGACGAAAGGCTGCCACCCTGTTAAGAATTCTCCGAAGATGGGCAGCCGGTTTGGACCTGAA CCCAGCCCCGACGATCACATCAGGAACAACAACCATAATGTAA
AA sequence Show only first row Show all	>Lus10006090 pacid=23174788 polypeptide=Lus10006090 locus=Lus10006090.g ID=Lus10006090.BGIv1.0 annot-version=v1.0 MVQSMTVSPRAIFPPRKRRPSAGAFIPPNFADQKLVQSLLILSQEISSIQPFQFLLRRNSQSIIRKTKLLSILFDEVIRNPILILSPTLLCFEEMYILLQ RIRTLIEDCSNGSKMWLLMQIESVANGFHELTVELSTLLDIFPVNEVDLSEDVQELVVLIRKQCSLVKPHLDPTDCNLRREVLTMLDRIKREIVPDHSKL LAIFDQTGLQTAARCTDEIECLEDEVQNQTDEKSKSEVIALIGLVRYAKCVLYGASSPDSDGQRRNMTSSSAEAINNIPPDFRCPISLDLMRDPVVVATG QTYDRESISLWIESGHNTCPKTGQSLAHTNLIPNRALKNLISMWCREQKIPFEATENTQRSNGVIPNKAAMEATRMTVSFLTKELSGSQSMEAANGVVYE LRALAKTNSDSRSFISEAGAIPLLIRYLGSDIGSVLPNLQVNAVTTILNLSILEANKTQIMETDGALNGIIEVLRSGATWEAKGNAAATIFSLSGINSYR KRLGRKNRVIKGLMDLAQLGPNSSKRDALVAILTLAGDRDTVGKLIEAGVVEIVTGVLDTLPEEAATILEVVVKKGGLSAIAAVYNKIKKLSVLLREGSE TSRESAAATLVTICRKGGSEMVAELAAMPGIERIIWELMGTGTVRARRKAATLLRILRRWAAGLDLNPAPTITSGTTTIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	0	1
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	1.0	0.9463
AT5G17165			unknown protein		Lus10002135 [exp]	1.4	0.9361
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	3.7	0.8773
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	3.9	0.9049
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	4.0	0.8950
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	4.5	0.8686
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	6.0	0.8792
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027970 [exp]	6.2	0.8647
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10041953 [exp]	6.7	0.8689
					Lus10021100 [exp]	8.1	0.8863

Compare expression of checked genes

Lus10006090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.