Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06920 107 / 1e-26 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT5G01840 100 / 2e-24 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT2G30400 99 / 2e-23 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT5G58360 97 / 1e-22 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT4G18830 85 / 4e-18 OFP ATOFP5, OFP5 ovate family protein 5 (.1) AT5G19650 76 / 6e-16 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G18500 72 / 5e-14 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT3G52525 67 / 3e-13 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 64 / 5e-12 OFP Ovate family protein (.1) AT2G36030 59 / 3e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025241 [exp] 426 / 6e-150 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10014164 [exp] 143 / 2e-41 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10042224 [exp] 109 / 9e-27 AT5G01840 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10008589 [exp] 108 / 1e-26 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10015236 [exp] 95 / 2e-21 AT4G18830 112 / 1e-27 ovate family protein 5 (.1) Lus10011092 [exp] 90 / 5e-20 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 89 / 1e-19 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10041730 [exp] 73 / 2e-14 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10021302 [exp] 69 / 2e-13 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G134200 [exp] 156 / 9e-44 AT1G06920 117 / 1e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.006G107700 [exp] 151 / 5e-42 AT1G06920 116 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.013G155200 [exp] 119 / 5e-30 AT1G06920 130 / 3e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.019G128500 [exp] 113 / 3e-28 AT1G06920 129 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.004G062100 [exp] 108 / 3e-26 AT4G18830 104 / 9e-25 ovate family protein 5 (.1) Potri.006G156176 [exp] 87 / 3e-19 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.018G080100 [exp] 85 / 1e-18 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.002G262500 [exp] 80 / 2e-16 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.007G028000 [exp] 78 / 9e-16 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.009G161700 [exp] 74 / 1e-15 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10006092 pacid=23174759 polypeptide=Lus10006092 locus=Lus10006092.g ID=Lus10006092.BGIv1.0 annot-version=v1.0 ATGGGAAAATTCCGCCGATTCCGGCTATCCGACATGATGCCCAACGCCTGGTTCTACAAGCTCAGAGACTTCGGCGCCACCGCCCACAAAAAAACCCCCA ACAAACCCAAGTTGTCACATTTACCCACTTCCGCTACTCCATACCATTCAAAACCAGATCATCAAACTCAACAACAACATTACTCCTACTCCAGAAAGTC CTACCATTTCACCAGAGACCTTAATCCCCGCGACGACATAAATTCCTCCACCGCCCAAAGATCCAAACGTAGGACTTCTACTACTACTGCCACTGCCAGG TCATCTCCCAAGTTTGTTTCTTCCTCCTCCTCCTCTGTTCCCAATTGGCCTAAACCCGACTCTCCCTCAGGTTCACTCTCCGATTCCGACTCTTTTTCGC CCGAATTCCGGTCTGACTGTTCTCTCACCACCGAATCCTTCGATAAGAAGGTGTCCTGGTCCAGCAACTCATGCGGCTGCCCTCTGGAGTTGGTTGATTC CTCTAGTGCTAGTAGCGACATTATCATCGACGTCGATAAACATTCTCTGCCTACCAAAAAACAAGCACTCCAGGTGTTCGATCATTTGCCCGCCCTTCAT CTCCCTCCAATTTTAACCAAAGGTCAATCCACGAAGAAACAGAGTACTGGGAGGAAGCATTATTACGGTGGGGGTAATAATTCCCCAGGGATAAAGCTAC GGGCTAACTCCCCCAGAATTGGGTGTCAGTACAGGAGAAAAAATCAATTGCAGGGAGGGCGGAAGAGCGTGTCGTCGGAGAGATCATCATCATTATCATC ATCATCAAGGAGGAGGATGAGTAAAACGGTGTCGTCTGGTTGCTTGGCAGTGGTGAAATCATCGTACGATCCGCAGAGGGATTTCAGGGAGTCGATGGTG GAGATGATTGTGGAGAAGAACATCAGCGCGTCCAAAGATTTGGAAGACCTTCTCGCTTGTTATCTCTCTCTTAACTCGGATGAGTATCATGATGTCATCA TCAAAGTGTTCAAGCAAATTTGGTTCGACCATCTAATTACCACTTCCAAGTGA
AA sequence Show only first row Show all	>Lus10006092 pacid=23174759 polypeptide=Lus10006092 locus=Lus10006092.g ID=Lus10006092.BGIv1.0 annot-version=v1.0 MGKFRRFRLSDMMPNAWFYKLRDFGATAHKKTPNKPKLSHLPTSATPYHSKPDHQTQQQHYSYSRKSYHFTRDLNPRDDINSSTAQRSKRRTSTTTATAR SSPKFVSSSSSSVPNWPKPDSPSGSLSDSDSFSPEFRSDCSLTTESFDKKVSWSSNSCGCPLELVDSSSASSDIIIDVDKHSLPTKKQALQVFDHLPALH LPPILTKGQSTKKQSTGRKHYYGGGNNSPGIKLRANSPRIGCQYRRKNQLQGGRKSVSSERSSSLSSSSRRRMSKTVSSGCLAVVKSSYDPQRDFRESMV EMIVEKNISASKDLEDLLACYLSLNSDEYHDVIIKVFKQIWFDHLITTSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006092 [exp]	0	1
AT5G41020	MYB		myb family transcription facto...		Lus10022926 [exp]	4.9	0.7749
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10012501 [exp]	6.1	0.7833
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10043002 [exp]	9.2	0.7614
AT5G10530			Concanavalin A-like lectin pro...		Lus10014648 [exp]	11.5	0.7326
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023698 [exp]	13.7	0.7293
AT1G10340			Ankyrin repeat family protein ...		Lus10038608 [exp]	16.0	0.7474
AT1G24620			EF hand calcium-binding protei...		Lus10024574 [exp]	17.3	0.7058
AT5G41020	MYB		myb family transcription facto...		Lus10024036 [exp]	26.1	0.7448
AT1G24140			Matrixin family protein (.1)		Lus10035221 [exp]	28.3	0.7223
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010866 [exp]	28.9	0.7219

Compare expression of checked genes

Lus10006092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.