Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51620 247 / 3e-72 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G61690 69 / 6e-12 nucleotidyltransferases (.1) AT3G56320 60 / 3e-09 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 54 / 1e-07 Nucleotidyltransferase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006095 [exp] 986 / 0 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 886 / 0 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10022746 [exp] 299 / 9e-93 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10014166 [exp] 278 / 1e-85 AT3G51620 539 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10000115 [exp] 167 / 9e-49 AT3G51620 124 / 5e-33 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 67 / 2e-11 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 67 / 4e-11 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10030265 [exp] 67 / 5e-11 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10012885 [exp] 61 / 1e-09 AT3G51620 297 / 5e-93 PAP/OAS1 substrate-binding domain superfamily (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G000900 [exp] 72 / 6e-13 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.013G154900 [exp] 70 / 2e-12 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.002G169732 [exp] 69 / 7e-12 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.015G020400 [exp] 67 / 2e-11 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.019G128800 [exp] 66 / 5e-11 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.014G097600 [exp] 64 / 2e-10 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.019G056800 [exp] 62 / 6e-10 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006094 pacid=23174755 polypeptide=Lus10006094 locus=Lus10006094.g ID=Lus10006094.BGIv1.0 annot-version=v1.0 ATGTGCCTTCATGTAATAGTTTTAACCCCTACTGTCTCTGCAGGGAACTTCTACCGAATAAGAAGTGCTTTTGGCTATGGTGCTCGAAAGCTAGGACGCA TTCTTTCACAGCCAGAATTAAATGTAGCTGAAGAACTCAGTAGATTCTTTTTCAACACTTTGCATAGGCATGTAAGCGGACAGAGGCCTGATGTTCAAGA TCCATACTGTAGATACAGTGCCGGGTCAACATTTCCAGGTTCTGAAACATCCGAAGACAACCCGAGAAATTTTGAATCAGAGTTTGCTGAAGCAAGTGGC ATAAACGGGGAATGCAGATGGGATACTGAACTGACATTGCAGAATGGCAACATTGTTGCGTTACCAGATGCAGAAATGAATTCGAACAAATACACCCTTG AAGCATACAATTCTGGAAATGGTTGCTTGGTTTCACAACATCGTCTATCTGGTGATGCAAAAGATCTAGCAACTTCTAGGATCCATCATCTATCCATTTC AAATGACGGAACAAGATATTTTGCTCAGTCAGCTGTGGAAAACGGTGATGTAATAAATGGGAATCCTGAACTAACGGATCTAGACAGTTACAAATTCAAT GGCAAGAGAATATCCTCTCACGTCCTGTCTTCTGCAGTTGATGAGACAACCCCTGTTGTAAGCAATGGCCTGGATGAGAACCATGTCACTAATGACCTTG AGGTTCTGTCTCCTGCTGGATCATTAAGCCATATGTCATCTTCAACTCCAGTTGAATTTCCTTCCGAAAGTATTTATCCTAGTCAATTAAGCTGTCAGTC ATCAGCTAGTACTGTTGGAACCCTGGAAGCATCGAACTCCTTGTCAGATCTAGGTGGTGATTATGAAAGTCACCTGCATAGTTTGGGCCATGGCCGGTGG TGGTATGATTACACACCAAGTTCTCCGGTTCCTCCTATGTCTCCTAAGATGTTAGCTCACTTGCAGAGCAAGAACTCATGGCATGGAATGAGACGAGCGC CCCATTACAGGCAGAATGCAAATGGTGTTGGCCCAAGACCTGTGTTCAATGCAATTAATGTATCCTTAATACGTGGTCCAATGTTTGCTACTGAAGAAGT TTCTAGACCGCGAGGAACTGGAACATATTTTCCCAATGTGAACCACTACAATGAAAGGCCTTTCACCCCAAGGGGAAGAAACCAAGTGCCACTACGGTCT CCTCGTAGCAATGGCCGCATTGCTCCTTTCCATGAGCCAAAAGTTCCAGATAGAAGCAGCCATGAGTTTCCACAGTGGCACGGTCATGTAGATGGCTGGA AATCACCGTCATTAGACTCTCATCATGTTGAACCCAATCCATACTCCAACGTCAATGGTGTAACACATTCTGCATATAGGATCGTGGAGTTTGGGTCGAT TGGACATCTGGCATTGGAGATTCCTTCTGCCGAAAGTGACGGGCAGCTTACCGCAGATTTTGTTAGCCCAAGTGTCACCGATCCATCCCAAGGGACACCG AAGCCAGAAGATCCTTCAGCTGTGGACGGAGATAGAGGGGTTTCTGCGAATACGTACCGGCTAAAAGACGATGAGGATTTCCCGCCGTTGTCTGAGAATG GTGGGAAGGGATCAGCTGTGTGGATCCCAAAGCCTGAGAGACAAAAGAGCAGCGACTGGTAA
AA sequence Show only first row Show all	>Lus10006094 pacid=23174755 polypeptide=Lus10006094 locus=Lus10006094.g ID=Lus10006094.BGIv1.0 annot-version=v1.0 MCLHVIVLTPTVSAGNFYRIRSAFGYGARKLGRILSQPELNVAEELSRFFFNTLHRHVSGQRPDVQDPYCRYSAGSTFPGSETSEDNPRNFESEFAEASG INGECRWDTELTLQNGNIVALPDAEMNSNKYTLEAYNSGNGCLVSQHRLSGDAKDLATSRIHHLSISNDGTRYFAQSAVENGDVINGNPELTDLDSYKFN GKRISSHVLSSAVDETTPVVSNGLDENHVTNDLEVLSPAGSLSHMSSSTPVEFPSESIYPSQLSCQSSASTVGTLEASNSLSDLGGDYESHLHSLGHGRW WYDYTPSSPVPPMSPKMLAHLQSKNSWHGMRRAPHYRQNANGVGPRPVFNAINVSLIRGPMFATEEVSRPRGTGTYFPNVNHYNERPFTPRGRNQVPLRS PRSNGRIAPFHEPKVPDRSSHEFPQWHGHVDGWKSPSLDSHHVEPNPYSNVNGVTHSAYRIVEFGSIGHLALEIPSAESDGQLTADFVSPSVTDPSQGTP KPEDPSAVDGDRGVSANTYRLKDDEDFPPLSENGGKGSAVWIPKPERQKSSDW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006094 [exp]	0	1
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10006274 [exp]	2.2	0.8084
AT5G24740			Protein of unknown function (D...		Lus10003834 [exp]	2.8	0.7854
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Lus10008143 [exp]	7.7	0.7706
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10012322 [exp]	13.0	0.7425
AT5G14520			pescadillo-related (.1)		Lus10001361 [exp]	23.9	0.7843
AT3G24090			glutamine-fructose-6-phosphate...		Lus10026998 [exp]	35.3	0.7642
AT4G10930			unknown protein		Lus10032402 [exp]	37.6	0.7424
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10026856 [exp]	49.4	0.7142
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	49.4	0.7201
					Lus10030198 [exp]	66.0	0.6937

Compare expression of checked genes

Lus10006094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.