Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51620 659 / 0 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G56320 389 / 2e-125 PAP/OAS1 substrate-binding domain superfamily (.1) AT3G61690 403 / 1e-123 nucleotidyltransferases (.1) AT2G40520 331 / 2e-104 Nucleotidyltransferase family protein (.1.2.3.4) AT2G39740 68 / 1e-11 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025239 [exp] 1460 / 0 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006094 [exp] 989 / 0 AT3G51620 259 / 6e-77 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10022746 [exp] 818 / 0 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10014166 [exp] 649 / 0 AT3G51620 539 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 414 / 2e-135 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 416 / 2e-128 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10042221 [exp] 392 / 3e-125 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030265 [exp] 414 / 6e-125 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004019 [exp] 383 / 1e-119 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G128800 [exp] 468 / 6e-153 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.013G154900 [exp] 467 / 2e-152 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.015G020400 [exp] 426 / 5e-132 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 421 / 3e-130 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 414 / 1e-127 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 409 / 2e-125 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.019G056800 [exp] 390 / 1e-124 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.011G116501 [exp] 77 / 2e-16 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006095 pacid=23174757 polypeptide=Lus10006095 locus=Lus10006095.g ID=Lus10006095.BGIv1.0 annot-version=v1.0 ATGGGCGATCTTCGACCGTGGTCACCAGAAGTTAACGGCGGCGAAGTCGCTGAGGAGAGGCCATCGTTTTCCTCTTTGCCGTCCGCTCCGATTGGTGCGG CGAACTGGAAGATAGCCGAGGCGGCGGCACAACTGATCATTGCGCAGGTGCAGCCGACTCTCGTCTCGGAAGAGAGGAGAAAAGCTGTTGTTGATTACGT CCAGCGGCTGATTAGAAATTCCATTGGTTGCGAGGTACTCCCTTTTGGATCAGTTCCATTGAAAACCTATCTTCCAGATGGAGACATTGATTTGACAACC TTTGGTGGTGCAAACATGGAAGAGTCGATGGCTAATGATGTGCGGTCAATCCTTGAGATGGAAGATCAGAACACTGCTGCAGAGTTTGTAGTAAAGGACG TCCAATTGATTAGGGCGGAGGTTAAGCTTGTAAAATGTTTGGTGCAGAACATTGTAGTTGATATATCCTTCAATCAGTTAGGAGGTCTCTGTACTTTATG CTTTCTTGAGGAGGTTGATCGCTTTATCGGCAGAGACCATATTTTCAAGAAAAGCATTATATTGATCAAGGCCTGGTGCTATTATGAGAGCCGGATTCTT GGAGCACATCATGGCTTAATATCTACATATGCTTTGGAAACGTTGGTTCTTTACATATTCCAGCGCTTCCACTCATTACTTGATGGTCCTCTAGCTGTTT TGTATAAATTTTTAGAGTATTTTAGCAAATTTGATTGGGATAGCTTCTGCATCAGTTTGAATGGCCCAATCAGAACATCCTCATTGCCAGAAATTGTAGT GGATTTTTCTGACAATGATGGATTTGATCCACTGCTCAGTCATGAATTCCTCAAAGAGTGCGCTGACAGGTTCTCTGTTCCTGTCAGTGGATCTGATACA AACCCCCGTTTGTTTCCTCCTAAGCATCTCAATATCGTTGATCCATTGAAAGAAAACAACAACCTTGGTCGTAGTGTGAGCAAAGGGAACTTCTACCGAA TAAGAAGTGCTTTTGGCTATGGTGCTCGAAAGCTAGGACGCATTCTTTCACAGCCAGAATTAAATGTAGCTGAAGAACTCAGTAGATTCTTTTTCAACAC TTTGCATAGGCATGTAAGCGGACAGAGGCCTGATGTTCAAGATCCATACTGTAGATACAGTGCCGGGTCAACATTTCCAGGTTCTGAAACATCCGAAGAC AACCCGAGAAATTTTGAATCAGAGTTTGCTGAAGCAAGTGGCATAAACGGGGAATGCAGATGGGATACTGAACTGACATTGCAGAATGGCAACATTGTTG CGTTACCAGATGCAGAAATGAATTCGAACAAATACACCCTTGAAGCATACAATTCTGGAAATGGTTGCTTGGTTTCACAACATCGTCTATCTGGTGATGC AAAAGATCTAGCAACTTCTAGGATCCATCATCTATCCATTTCAAATGACGGAACAAGATATTTTGCTCAGTCAGCTGTGGAAAACGGTGATGTAATAAAT GGGAATCCTGAACTAACGGATCTAGACAGTTACAAATTCAATGGCAAGAGAATATCCTCTCACGTCCTGTCTTCTGCAGTTGATGAGACAACCCCTGTTG TAAGCAATGGCCTGGATGAGAACCATGTCACTAATGACCTTGAGGTTCTGTCTCCTGCTGGATCATTAAGCCATATGTCATCTTCAACTCCAGTTGAATT TCCTTCCGAAAGTATTTATCCTAGTCAATTAAGCTGTCAGTCATCAGCTAGTACTGTTGGAACCCTGGAAGCATCGAACTCCTTGTCAGATCTAGGTGGT GATTATGAAAGTCACCTGCATAGTTTGGGCCATGGCCGGTGGTGGTATGATTACACACCAAGTTCTCCGGTTCCTCCTATGTCTCCTAAGATGTTAGCTC ACTTGCAGAGCAAGAACTCATGGCATGGAATGAGACGAGCGCCCCATTACAGGCAGAATGCAAATGGTGTTGGCCCAAGACCTGTGTTCAATGCAATTAA TGTATCCTTAATACGTGGTCCAATGTTTGCTACTGAAGAAGTTTCTAGACCGCGAGGAACTGGAACATATTTTCCCAATGTGAACCACTACAATGAAAGG CCTTTCACCCCAAGGGGAAGAAACCAAGTGCCACTACGGTCTCCTCGTAGCAATGGCCGCATTGCTCCTTTCCATGAGCCAAAAGTTCCAGATAGAAGCA GCCATGAGTTTCCACAGTGGCACGGTCATGTAGATGGCTGGAAATCACCGTCATTAGACTCTCATCATGTTGAACCCAATCCATACTCCAACGTCAATGG TGTAACACATTCTGCATATAGGATCGTGGAGTTTGGGTCGATTGGACATCTGGCATTGGAGATTCCTTCTGCCGAAAGTGACGGGCAGCTTACCGCAGAT TTTGTTAGCCCAAGTGTCACCGATCCATCCCAAGGGACACCGAAGCCAGAAGTACAAGAAAAAAACCATTGA
AA sequence Show only first row Show all	>Lus10006095 pacid=23174757 polypeptide=Lus10006095 locus=Lus10006095.g ID=Lus10006095.BGIv1.0 annot-version=v1.0 MGDLRPWSPEVNGGEVAEERPSFSSLPSAPIGAANWKIAEAAAQLIIAQVQPTLVSEERRKAVVDYVQRLIRNSIGCEVLPFGSVPLKTYLPDGDIDLTT FGGANMEESMANDVRSILEMEDQNTAAEFVVKDVQLIRAEVKLVKCLVQNIVVDISFNQLGGLCTLCFLEEVDRFIGRDHIFKKSIILIKAWCYYESRIL GAHHGLISTYALETLVLYIFQRFHSLLDGPLAVLYKFLEYFSKFDWDSFCISLNGPIRTSSLPEIVVDFSDNDGFDPLLSHEFLKECADRFSVPVSGSDT NPRLFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFGYGARKLGRILSQPELNVAEELSRFFFNTLHRHVSGQRPDVQDPYCRYSAGSTFPGSETSED NPRNFESEFAEASGINGECRWDTELTLQNGNIVALPDAEMNSNKYTLEAYNSGNGCLVSQHRLSGDAKDLATSRIHHLSISNDGTRYFAQSAVENGDVIN GNPELTDLDSYKFNGKRISSHVLSSAVDETTPVVSNGLDENHVTNDLEVLSPAGSLSHMSSSTPVEFPSESIYPSQLSCQSSASTVGTLEASNSLSDLGG DYESHLHSLGHGRWWYDYTPSSPVPPMSPKMLAHLQSKNSWHGMRRAPHYRQNANGVGPRPVFNAINVSLIRGPMFATEEVSRPRGTGTYFPNVNHYNER PFTPRGRNQVPLRSPRSNGRIAPFHEPKVPDRSSHEFPQWHGHVDGWKSPSLDSHHVEPNPYSNVNGVTHSAYRIVEFGSIGHLALEIPSAESDGQLTAD FVSPSVTDPSQGTPKPEVQEKNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	0	1
AT4G12750			Homeodomain-like transcription...		Lus10016078 [exp]	1.4	0.9073
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	2.4	0.9044
AT3G45830			unknown protein		Lus10018121 [exp]	3.5	0.9042
					Lus10000409 [exp]	4.2	0.8947
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	4.9	0.8959
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10025447 [exp]	5.1	0.8868
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	5.3	0.9048
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10010527 [exp]	7.1	0.8696
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	7.4	0.9029
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	7.5	0.8855

Compare expression of checked genes

Lus10006095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.