Plant FIBer expression Database

Lus10006096 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51610 318 / 3e-111 NPU NO PRIMEXINE AND PLASMA MEMBRANE UNDULATION, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025238
[exp]
405 / 9e-146 AT3G51610 336 / 3e-118 NO PRIMEXINE AND PLASMA MEMBRANE UNDULATION, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G134700
[exp]
348 / 2e-123 AT3G51610 330 / 7e-116 NO PRIMEXINE AND PLASMA MEMBRANE UNDULATION, unknown protein
PFAM info
Representative CDS sequence
>Lus10006096 pacid=23174768 polypeptide=Lus10006096 locus=Lus10006096.g ID=Lus10006096.BGIv1.0 annot-version=v1.0
ATGGCGGCGACCGGGGAACGAAGTTGGAGCAGAATTGCTTTGGTTGTTCTGCTGATACTGTCACTCTCGTCTTATTCAACGGCCTATCGTCCGGGAGACC
TCATTCCGATGAGCAAGATGGGGCAATACCACTCGTCCAGAACGATGTGGCATGATATGATCGGCAAGCATTGCCCCATTTTTGCCGTCAATCGCGAGGT
GTTGGTACCTATCGCAAAGCCCACGGGTTACACTGGTGCAGATCCTTATAAGATATCGTTTCAAGTTGGAAGAGAAAAATTTCAAACTCCATGGCTTTAT
GTGATAAACAGGAAAAGTGCCGAGGTCCCTATGATTGATGTGCATTTGAGATATGCAGGTGGTGATTTGCACGGGATCACTGCTAAAGTCGTAGATATGC
CTCATCACTATGTGGAAACACACCCCAACATCCGTAAACAATTTTGGGATCCACAGCATTGGCCCAAACACGTTCTTGTAAGATACAGTTGGGAGCAGCA
TTCTGATGTAGATGTCACTGCCGGTTTCTATGTTTTGTTTGGATCAGGCCTTATGATGTCTTTCATTCTTTCAATTTACATCCTGCAGTCCTCACGGGAC
AAATTGACAAGGTTTGTAAGGGAGACAGTTGTAGAAGGGGGCATTCCCTCCGGAGGGGTCGCAAAGGTTGAATGA
AA sequence
>Lus10006096 pacid=23174768 polypeptide=Lus10006096 locus=Lus10006096.g ID=Lus10006096.BGIv1.0 annot-version=v1.0
MAATGERSWSRIALVVLLILSLSSYSTAYRPGDLIPMSKMGQYHSSRTMWHDMIGKHCPIFAVNREVLVPIAKPTGYTGADPYKISFQVGREKFQTPWLY
VINRKSAEVPMIDVHLRYAGGDLHGITAKVVDMPHHYVETHPNIRKQFWDPQHWPKHVLVRYSWEQHSDVDVTAGFYVLFGSGLMMSFILSIYILQSSRD
KLTRFVRETVVEGGIPSGGVAKVE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G51610 NPU NO PRIMEXINE AND PLASMA MEMBRA... Lus10006096
[exp]
0 1
AT1G20575 DPMS1 dolichol phosphate mannose syn... Lus10013228
[exp]
3.2 0.8653
AT5G03345 unknown protein Lus10013817
[exp]
7.7 0.8610
AT5G51700 ATRAR1, RPR2, P... Required for Mla12 resistance ... Lus10031107
[exp]
15.9 0.8629
AT3G60540 Preprotein translocase Sec, Se... Lus10037570
[exp]
16.0 0.8611
AT3G25120 Mitochondrial import inner mem... Lus10008094
[exp]
16.7 0.8545
AT5G15220 Ribosomal protein L27 family p... Lus10007170
[exp]
19.0 0.8601
AT1G28410 unknown protein Lus10015403
[exp]
23.9 0.8454
AT4G31460 Ribosomal L28 family (.1) Lus10028995
[exp]
24.7 0.8258
AT1G27450 APRT, ATAPT1, A... ARABIDOPSIS THALIANA ADENINE P... Lus10007757
[exp]
26.8 0.8627
AT1G73177 APC13, BNS anaphase-promoting complex 13,... Lus10007286
[exp]
30.6 0.8479

Lus10006096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.