Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020961 [exp] 125 / 2e-33 ND / Lus10031047 [exp] 121 / 4e-33 AT3G57280 132 / 6e-37 Transmembrane proteins 14C (.1) Lus10003899 [exp] 89 / 4e-21 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006099 pacid=23174765 polypeptide=Lus10006099 locus=Lus10006099.g ID=Lus10006099.BGIv1.0 annot-version=v1.0 ATGGTCCTGCACTTATATGAAAAGGTTAGGAACAATAGGATCTTCATCGATGCATCAGAAGGTAAGTTTGGGTCGGATTTCCGCCTCACGGTTGACACGT GTGAATCGGGGAAGGCTCGGCACTCTATTTTCTTGGCTTCGTCTCAACTCAGATGGCTGGAAGGTGTGCTTAAGGTTGCTTCCTCCAATGACTGGCGATT CCCTTTAGAGTGCGAGTCAAAGAAACCCAGGAGAGCAATCTCCTTAACGTGCTTCCATCTCAGAGGCGAAAGGGTTGTGAAGATCTATGAGAGGTGTGCA ACTGGGAAAGTTTTCTTCATCATTATCCCAGGAGTTAGCACGAAGGGTGGGTGGTTTCCGTTGCTCCGACTCTTGCAAGATGTTCTTAAGAAGAGCTCTC CGCTGGAGAGAGGGGTGGGTAAGAAATCTTTTGCTGAAGTGGTCACGATGACTCCGTGGTCTCAGAAAAGAAGCTGTCACGGTAAGACGATACAGGGGGT GGAGGTGATTGAGGTAGAAGAGGTCAGGGTAAAGGAAAGGGAAGAGTACCTCAAGCGATGTGTGGTTTTCCGGTTTAATACGGAGATGGTGGGCTCATAA
AA sequence Show only first row Show all	>Lus10006099 pacid=23174765 polypeptide=Lus10006099 locus=Lus10006099.g ID=Lus10006099.BGIv1.0 annot-version=v1.0 MVLHLYEKVRNNRIFIDASEGKFGSDFRLTVDTCESGKARHSIFLASSQLRWLEGVLKVASSNDWRFPLECESKKPRRAISLTCFHLRGERVVKIYERCA TGKVFFIIIPGVSTKGGWFPLLRLLQDVLKKSSPLERGVGKKSFAEVVTMTPWSQKRSCHGKTIQGVEVIEVEEVRVKEREEYLKRCVVFRFNTEMVGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006099 [exp]	0	1
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018704 [exp]	3.0	0.7414
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10035423 [exp]	11.8	0.6683
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	20.3	0.6899
AT2G22560			Kinase interacting (KIP1-like)...		Lus10012730 [exp]	24.7	0.6826
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	30.2	0.6818
					Lus10043183 [exp]	32.8	0.6158
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	34.9	0.6525
					Lus10022721 [exp]	35.6	0.6719
AT2G37470			Histone superfamily protein (....		Lus10006484 [exp]	38.9	0.6175
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Lus10024298 [exp]	42.2	0.6353

Compare expression of checked genes

Lus10006099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.