Plant FIBer expression Database

Lus10006100 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06510 51 / 5e-09 SFR2, ATSFR2 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010837
[exp]
115 / 7e-36 AT3G06510 55 / 2e-10 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2)
Lus10030186
[exp]
115 / 7e-36 AT3G06510 55 / 2e-10 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2)
Lus10022976
[exp]
115 / 7e-36 AT3G06510 55 / 2e-10 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2)
Lus10011147
[exp]
116 / 4e-32 AT3G06510 826 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2)
Lus10043048
[exp]
115 / 8e-32 AT3G06510 767 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G149500
[exp]
62 / 5e-13 AT3G06510 832 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10006100 pacid=23174780 polypeptide=Lus10006100 locus=Lus10006100.g ID=Lus10006100.BGIv1.0 annot-version=v1.0
ATGGCGTTCTTGACTCTCGTCGTGTCGGCCACCAAGGTCGCCGGCGTCTTAGTAAGCCTCACCGTCGCTTCCAACGCCATCTCTTTCTGGCGTTTCCAGA
AGAAGAATCTCAAGTCTTTCGAACCCGGTATTGACGAGACCTCAGAGATTCTGGCCGCTTTTAATGTCGACGGTAAATTCCTTCTTAAGCTTCTATCCAA
GTTCCCCAGCCTAGCCGCTGCTTAA
AA sequence
>Lus10006100 pacid=23174780 polypeptide=Lus10006100 locus=Lus10006100.g ID=Lus10006100.BGIv1.0 annot-version=v1.0
MAFLTLVVSATKVAGVLVSLTVASNAISFWRFQKKNLKSFEPGIDETSEILAAFNVDGKFLLKLLSKFPSLAAA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G06510 SFR2, ATSFR2 SENSITIVE TO FREEZING 2, Glyco... Lus10006100
[exp]
0 1
AT3G06510 SFR2, ATSFR2 SENSITIVE TO FREEZING 2, Glyco... Lus10030186
[exp]
1.0 0.9961
AT3G06510 SFR2, ATSFR2 SENSITIVE TO FREEZING 2, Glyco... Lus10022976
[exp]
2.0 0.9916
AT3G06510 SFR2, ATSFR2 SENSITIVE TO FREEZING 2, Glyco... Lus10010837
[exp]
2.4 0.9498
AT3G16000 MFP1 MAR binding filament-like prot... Lus10025769
[exp]
19.9 0.8447
AT1G78060 Glycosyl hydrolase family prot... Lus10022374
[exp]
29.0 0.8186
AT5G51160 Ankyrin repeat family protein ... Lus10029008
[exp]
29.1 0.8131
AT5G49030 OVA2 ovule abortion 2, tRNA synthet... Lus10043413
[exp]
30.2 0.8396
AT4G30825 Tetratricopeptide repeat (TPR)... Lus10036601
[exp]
31.2 0.8273
AT2G04360 unknown protein Lus10016084
[exp]
34.5 0.8337
AT4G28080 Tetratricopeptide repeat (TPR)... Lus10036604
[exp]
34.9 0.8083

Lus10006100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.