Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22550 171 / 4e-52 Protein of unknown function (DUF581) (.1) AT3G63210 122 / 4e-33 MARD1 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) AT5G11460 112 / 6e-29 Protein of unknown function (DUF581) (.1) AT2G25690 93 / 7e-22 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) AT1G22160 61 / 2e-11 Protein of unknown function (DUF581) (.1) AT1G53903 57 / 3e-10 Protein of unknown function (DUF581) (.1) AT1G53885 57 / 3e-10 Protein of unknown function (DUF581) (.1) AT4G39795 55 / 1e-09 Protein of unknown function (DUF581) (.1) AT1G79970 57 / 2e-09 unknown protein AT1G78020 55 / 3e-09 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010568 [exp] 449 / 2e-161 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10042606 [exp] 139 / 2e-39 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 135 / 4e-38 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 93 / 2e-21 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 59 / 3e-10 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10027642 [exp] 58 / 7e-10 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1) Lus10011923 [exp] 57 / 8e-10 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10025770 [exp] 58 / 2e-09 AT3G22550 100 / 2e-24 Protein of unknown function (DUF581) (.1) Lus10035894 [exp] 57 / 2e-09 AT3G22550 98 / 1e-23 Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G154600 [exp] 226 / 4e-73 AT3G22550 219 / 2e-70 Protein of unknown function (DUF581) (.1) Potri.010G085700 [exp] 219 / 4e-70 AT3G22550 216 / 8e-69 Protein of unknown function (DUF581) (.1) Potri.005G211500 [exp] 177 / 6e-54 AT3G22550 182 / 4e-56 Protein of unknown function (DUF581) (.1) Potri.002G050800 [exp] 176 / 9e-54 AT3G22550 174 / 3e-53 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 109 / 3e-27 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 108 / 4e-27 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.001G179700 [exp] 91 / 1e-20 AT5G11460 141 / 1e-38 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 66 / 2e-12 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 61 / 3e-11 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.010G011700 [exp] 59 / 1e-10 AT5G49120 97 / 2e-26 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10006102 pacid=23174784 polypeptide=Lus10006102 locus=Lus10006102.g ID=Lus10006102.BGIv1.0 annot-version=v1.0 ATGTCAGAGTACAATTTGTTAAGCAGAAACGGCAAGTCCAATTCAGTTCCCCGGCTATTTACTGCCTTGAAGAACTTCCCTGAATCAACAACAACGGTCA CAGAATCCATGATGATGAGCCCAACTTCCATCCTAGACACCAAACCCTTCTCCGCCTTCAAAAACCCCTTCTCCTCCGACCCCAACCCGACCCGTAAACC CAGCAGCCAGTTCGATTCCCCCAAAATCGGTCTCGGATTAGTCGACGTCCTCTTCTCCGACGACGATGATCCGAAAAGCCCAACTACTCATACCCTGTCC AAACCGGAAACCAGAATGGTTCTATTCGGGTCGCAGCTAAAGATCCAGATTCCTTCTTCCCTGCTCCCCAATTCCCCCGCCGGGTCACCCAGATCCCCGG CCGATTTCGGTATCAAGACGAGGAATTATAACTCCCAATTGGGCAACTCATCCTTCTCGTCTAGTTTATCCCCTTCTCCTCCGGTGCCGGTATTCGGGTC GGGCAGCCTCTCTCCGAGTGAAATGGAGCTATCCGAGGACTATACCTGCGTGATCTCCCGTGGTCCCAACCCGAAAACCACTCACATATTCGATGATTGC ATTGTCGACAGCTGCTGCGGCGTTTTCACCTTCAATTCTTCGGAGAAGGAAGCTTCGTATCCCTCTGAGAGCTTCTTAAGCTCCTGCGACAATTGCGGGA AGAATCTCGGCCAGGGGAAAGACATCTACATGTACAGGGGAGAGAAAGCGTTCTGCAGTAGAGAATGCAGGTACCAGGAGATGCTGTTAGAGGAAGGAAT TGATGAAATGGATCCTCTTGATATCTATGGAACTTCCTCCTGA
AA sequence Show only first row Show all	>Lus10006102 pacid=23174784 polypeptide=Lus10006102 locus=Lus10006102.g ID=Lus10006102.BGIv1.0 annot-version=v1.0 MSEYNLLSRNGKSNSVPRLFTALKNFPESTTTVTESMMMSPTSILDTKPFSAFKNPFSSDPNPTRKPSSQFDSPKIGLGLVDVLFSDDDDPKSPTTHTLS KPETRMVLFGSQLKIQIPSSLLPNSPAGSPRSPADFGIKTRNYNSQLGNSSFSSSLSPSPPVPVFGSGSLSPSEMELSEDYTCVISRGPNPKTTHIFDDC IVDSCCGVFTFNSSEKEASYPSESFLSSCDNCGKNLGQGKDIYMYRGEKAFCSRECRYQEMLLEEGIDEMDPLDIYGTSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22550			Protein of unknown function (D...		Lus10006102 [exp]	0	1
AT1G58170			Disease resistance-responsive ...		Lus10026176 [exp]	3.5	0.8361
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	4.7	0.8569
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10012501 [exp]	13.8	0.7992
AT3G22550			Protein of unknown function (D...		Lus10010568 [exp]	16.2	0.8166
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10026565 [exp]	17.1	0.8097
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10040102 [exp]	18.7	0.7938
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	20.6	0.8138
AT1G67350			unknown protein		Lus10037020 [exp]	21.2	0.8139
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10029188 [exp]	22.8	0.7909
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	28.8	0.7930

Compare expression of checked genes

Lus10006102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.