Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45220 528 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 443 / 4e-152 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 427 / 1e-145 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 416 / 1e-140 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 389 / 5e-132 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT4G02320 382 / 1e-128 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 384 / 2e-128 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT1G11580 383 / 3e-128 ATPMEPCRA methylesterase PCR A (.1) AT3G49220 384 / 5e-128 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 382 / 1e-127 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027202 [exp] 735 / 0 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 731 / 0 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 607 / 0 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 434 / 5e-149 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 411 / 2e-139 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038918 [exp] 408 / 5e-139 AT5G51490 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 409 / 2e-138 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 407 / 5e-138 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 400 / 4e-135 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127700 [exp] 596 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 590 / 0 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 534 / 0 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 520 / 0 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 486 / 5e-169 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 484 / 2e-168 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127800 [exp] 446 / 1e-153 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 434 / 1e-148 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 413 / 4e-140 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 411 / 4e-139 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10006103 pacid=23174774 polypeptide=Lus10006103 locus=Lus10006103.g ID=Lus10006103.BGIv1.0 annot-version=v1.0 ATGATCAAGCTAGCCATGGGGCGGGCCATGACTGCTCAGGCCCACAACACTGTATTAGGCACAAAGTGTCGTAGCAAGAAGGAGAAGGCAGCGTGGGCCG ACTGTTTGACTCTCTATAATGACCTTGTTTCGCATCTGAATACAACTCTTACGAAAACCAAATGCACTGACTTCGACTCTCAGACCTGGCTCAGCGCCGC CCTAACTGACCTCGACACTTGTCGGGCTGGGTTCTCGGAACTCGGGTTGTCCGGCTCAGCCCTCCTACCCAACAACCACAACAATGTTTCTGAGCTGCTT AGCAATGCCCTTGCTTTGTCGAATTATAATGCGACATATTTTATTGCCACCTCATCAGTTGACTCAGACGGGTTTCCGAGCTGGGTGAGCCCCGACAATC GAAGGTTGCTGCAGTCAGGTGGTTCAGTACCACCAGCGGATATCGTGGTGGCGAAAGATGGGTCAGGGGACTTTGGGACGGTGAAGGAAGCAATTGCAGC GGCGGGGCAAAGGCAAAGGAGTGGTAGGAGGTTTGTGATAAAGATTAAAAGTGGGGTTTACAAGGAGAATGTTGAGATAGGGAAGAAACTGAAGAACATA ATGTTGGTCGGAGATGGGATGAGGAATACGGTTATCACCGGTAGCCGAAGCGTCGGCGGCGGGTCTACTACTTTCAACTCCGCTACCGTTGTGGTAACCG GCGACGGATTCATCGCTCGGGACATCACCTTCCGGAACACTGCCGGCGCAAAAAACCACCAGGCGGTAGCCCTCCGGTCAGGCTCCGACCTCTCGGCTTT CTACAAGTGCAGCTTCGAAAGCTACCAGGACACACTCTACGTCCACTCCAACCGACAGTTTTATCGCGAGTGCTACATCTACGGGACTGTCGATTTCATC TTCGGCAACGCAGCCGCCGTCCTCCAGAACTGCATGATCTACGCACGTCGGCCGATGGCCAAGCAGAAGATCACTATCACTGCGCAGGGTAGGACTGATC TGAACCAAAACACAGGCATTTCGATACACAATTCACGGGTCATGGCCGGTTCGGACCTCAGACCAGTTCTTGGTTCGTTCAAGACGTTCCTGGGCCGGCC GTGGAAGGCGTACTCGAGGACAGTGTTCATGCAGACGTTTCTCGACTCACTGGTTGACCCGGCTGGGTGGATGGAGTGGGACGGGGATTTCGCGTTGAGG ACTCTGTATTACGGTGAGTATAGGAATACAGGTCCTGGAGCTCCGACGGGTCGGAGGGTGAAGTGGGCCGGATACCGGGTCATCAGGAACGCAGGTGAAG CAGGGCGATTTAGTGTAGGGAATTTTATTGCTGGACAGTCTTGGATTCCTCGGACTGGAATCCCGTTCACGGCCGGGCTGTAG
AA sequence Show only first row Show all	>Lus10006103 pacid=23174774 polypeptide=Lus10006103 locus=Lus10006103.g ID=Lus10006103.BGIv1.0 annot-version=v1.0 MIKLAMGRAMTAQAHNTVLGTKCRSKKEKAAWADCLTLYNDLVSHLNTTLTKTKCTDFDSQTWLSAALTDLDTCRAGFSELGLSGSALLPNNHNNVSELL SNALALSNYNATYFIATSSVDSDGFPSWVSPDNRRLLQSGGSVPPADIVVAKDGSGDFGTVKEAIAAAGQRQRSGRRFVIKIKSGVYKENVEIGKKLKNI MLVGDGMRNTVITGSRSVGGGSTTFNSATVVVTGDGFIARDITFRNTAGAKNHQAVALRSGSDLSAFYKCSFESYQDTLYVHSNRQFYRECYIYGTVDFI FGNAAAVLQNCMIYARRPMAKQKITITAQGRTDLNQNTGISIHNSRVMAGSDLRPVLGSFKTFLGRPWKAYSRTVFMQTFLDSLVDPAGWMEWDGDFALR TLYYGEYRNTGPGAPTGRRVKWAGYRVIRNAGEAGRFSVGNFIAGQSWIPRTGIPFTAGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45220			Plant invertase/pectin methyle...		Lus10006103 [exp]	0	1
AT4G33985			Protein of unknown function (D...		Lus10002400 [exp]	6.3	0.7996
					Lus10027003 [exp]	11.7	0.7825
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043142 [exp]	12.5	0.8346
					Lus10032915 [exp]	15.7	0.7510
AT5G05340			Peroxidase superfamily protein...		Lus10009935 [exp]	15.8	0.8108
AT2G15130			Plant basic secretory protein ...		Lus10026583 [exp]	19.3	0.7374
					Lus10014263 [exp]	22.7	0.8084
AT5G59100			Subtilisin-like serine endopep...		Lus10002964 [exp]	25.5	0.6982
AT1G66470	bHLH	AtRHD6, RHD6, b...	ROOT HAIR DEFECTIVE6 (.1)		Lus10033592 [exp]	29.2	0.8081
AT4G26220			S-adenosyl-L-methionine-depend...		Lus10012913 [exp]	29.7	0.6296

Compare expression of checked genes

Lus10006103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.