Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62990 169 / 1e-49 EMB1692 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 96 / 2e-22 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 75 / 2e-15 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G21970 74 / 5e-15 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 68 / 6e-13 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 66 / 4e-12 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G33495 64 / 1e-11 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 60 / 3e-10 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G79120 51 / 2e-07 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G39120 51 / 2e-07 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010567 [exp] 340 / 8e-116 AT5G62990 509 / 2e-178 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 93 / 2e-21 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 93 / 2e-21 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 73 / 1e-14 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10003062 [exp] 64 / 2e-11 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10034086 [exp] 63 / 3e-11 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10005755 [exp] 63 / 4e-11 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10027440 [exp] 62 / 5e-11 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10041673 [exp] 62 / 7e-11 AT1G06440 495 / 2e-175 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G233900 [exp] 196 / 8e-60 AT5G62990 498 / 6e-174 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 99 / 2e-23 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 96 / 2e-22 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 79 / 1e-16 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 69 / 2e-13 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 69 / 3e-13 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 68 / 4e-13 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.016G030300 [exp] 67 / 1e-12 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G244900 [exp] 66 / 2e-12 AT1G06440 503 / 7e-180 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 54 / 2e-08 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10006104 pacid=23174770 polypeptide=Lus10006104 locus=Lus10006104.g ID=Lus10006104.BGIv1.0 annot-version=v1.0 ATGCTGGGTCATTACAGGATTCATAGATCCAGGTCGTGCTCTGTTGCAGTGACTCATGATGGCTGCTGCAACCGCAAAGGGCTGAATCTTAAGAGGCATC ACGAGGGTTTCCTGATCAAGTGTTCGGAGCTTCCGGATGTTTGTCGTTATAACACCACGATAGAGGAGTTGAGTAAAGAATCATTGGAAGCTGAGAAGAG GGCTTGCGCTCTGGTGAGGGAGGTGCTGGGATTGACAGCTGAGAAGAGAACTTTGATAGATCATTTGACGCATTTCAGGAAAGAATTCGGTCTGCCTAAC AAGTTGAAGAATATGATTCTACGCCACCCGGAGATGTTCTACGTTAGCGTGAAAGGTGTAAGGAATTCTGTTTTCCTTGTCGAGGGTTTCAATGACAAAG GTAAACTCTATGTGAAAGATGATACGTCTGTTATCAAAGATAAGTTGATGCATTTGGTGAGGGAATCGAAAAGAATGAGACAAGAGAGGCGCAAGGCTGC GATGAACAGAGGTGTTGATGGAGTTGTTCCTAATGGTATTGGCAGTGATGATGTATCTCATGATGTCGATGATGAGTATGATGATGGTTTCGAGAATATC TTTGAGGATTCGGACCTTGAAGATTTTGATGTCGATTCCATTGAAGACGTTGAGTTTTGGGGAAATAGAGAGAACACAGAATTTTGGGCTGCTGATGGTT CTTTTGTTCCTCAAGAGGGGGTAGTACCACCTCCAGAACCATGGTAG
AA sequence Show only first row Show all	>Lus10006104 pacid=23174770 polypeptide=Lus10006104 locus=Lus10006104.g ID=Lus10006104.BGIv1.0 annot-version=v1.0 MLGHYRIHRSRSCSVAVTHDGCCNRKGLNLKRHHEGFLIKCSELPDVCRYNTTIEELSKESLEAEKRACALVREVLGLTAEKRTLIDHLTHFRKEFGLPN KLKNMILRHPEMFYVSVKGVRNSVFLVEGFNDKGKLYVKDDTSVIKDKLMHLVRESKRMRQERRKAAMNRGVDGVVPNGIGSDDVSHDVDDEYDDGFENI FEDSDLEDFDVDSIEDVEFWGNRENTEFWAADGSFVPQEGVVPPPEPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Lus10006104 [exp]	0	1
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	13.9	0.7599
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036822 [exp]	71.4	0.6610
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10027062 [exp]	94.9	0.7021

Compare expression of checked genes

Lus10006104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.