Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60690 553 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 549 / 0 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 548 / 0 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 546 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G10810 521 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 510 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 110 / 2e-27 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 109 / 4e-27 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G06690 108 / 1e-26 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 95 / 2e-21 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041272 [exp] 588 / 0 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 583 / 0 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 541 / 0 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041303 [exp] 439 / 5e-156 AT1G60690 419 / 1e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 395 / 7e-138 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 390 / 6e-136 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 375 / 6e-130 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037408 [exp] 308 / 1e-104 AT1G60730 311 / 6e-106 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) Lus10010566 [exp] 208 / 2e-67 AT1G10810 198 / 3e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147700 [exp] 595 / 0 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 577 / 0 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 561 / 0 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 398 / 6e-139 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 389 / 2e-135 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 387 / 1e-134 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 382 / 1e-132 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 120 / 5e-31 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 114 / 8e-29 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.005G207000 [exp] 110 / 3e-27 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10006105 pacid=23174771 polypeptide=Lus10006105 locus=Lus10006105.g ID=Lus10006105.BGIv1.0 annot-version=v1.0 ATGGCAGCGGTGATGAAGAGGATCAAGTTGGGGTCACAAGGTCTAGAGGTGTCGGCACAGGGACTTGGGTGTATGGGAATGTCTGCTTTCTATGGTCCTC CTAAGCCAGAATCAGACATGATTGCACTCATCCATCATGCCATCAACAAAGGCGTCACTTTCCTCGACACCTCCGATATCTATGGCCCTCACACCAACGA AATCCTTCTCGGCAAGGCTTTAATGGAGGGTGGAGGAGTTAGGGACAAGGTTCAGTTGGCCACAAAATTTGGTATCGTTAGCTACGAAGGTGACAAGATG GAAGCTCGTGGAGATCCTGCTTATGTAAGGGCTGCTTGTGAAGCTAGCCTCAAGAGGCTTCAAGTTAACTGCATCGATCTTTATTATCAGCATCGAATCG ACACCACCGTTCCAATTGAAGTCACGGTTAGCGAGCTGAAGAAACTAGTTGAAGAGGGTAAAATAAAGTACATTGGTCTGTCAGAGGCCTCTGCTGCGAC AATCAGAAGAGCTCATACTGTACATCCTATAACAGCAGTGCAGTTGGAGTGGTCCTTGTGGTCAAGGGACGTGGAGGAAGATATTGTCCCTGTCTGCAGA GAACTCGGGATTGGGATTGTTGCCTACAGTCCTCTTGGTCGAGGATTCTTAGCATCAGGGCCTAAACTGGTTGAAAACTTGGATGAGGGTGACTTTAGAA AGATTCAACCACGGTTCAAGGGTGAGAACTTGGATCACAACAAAACCCTCTTCGACCGGGTTACTGAAATTGCAAGCCGAAAAGGATGCACAGCGTCGCA ACTAGCACTTGCTTGGGTGCATCACCAGGGTGATGATGTATGCCCCATTCCAGGAACAACTAAGATTGACAACTTCAACCAGAACATCGGCGCTCTATCT GTCAAACTCACACCAGACGAAATGGCTGAACTTGAAGCCATTGCTTCTGCTGATTCTGTGAAAGGTGGTAGGTACGTCGATGGCATGCCAACATACAAAG TAGCCGACACCCCACCTCTGTCTTCCTGGAAAGGCCAGTAA
AA sequence Show only first row Show all	>Lus10006105 pacid=23174771 polypeptide=Lus10006105 locus=Lus10006105.g ID=Lus10006105.BGIv1.0 annot-version=v1.0 MAAVMKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINKGVTFLDTSDIYGPHTNEILLGKALMEGGGVRDKVQLATKFGIVSYEGDKM EARGDPAYVRAACEASLKRLQVNCIDLYYQHRIDTTVPIEVTVSELKKLVEEGKIKYIGLSEASAATIRRAHTVHPITAVQLEWSLWSRDVEEDIVPVCR ELGIGIVAYSPLGRGFLASGPKLVENLDEGDFRKIQPRFKGENLDHNKTLFDRVTEIASRKGCTASQLALAWVHHQGDDVCPIPGTTKIDNFNQNIGALS VKLTPDEMAELEAIASADSVKGGRYVDGMPTYKVADTPPLSSWKGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10006105 [exp]	0	1
					Lus10000859 [exp]	2.2	0.9849
AT3G58480			calmodulin-binding family prot...		Lus10013759 [exp]	2.6	0.9768
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10000242 [exp]	4.6	0.9692
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034838 [exp]	6.5	0.9797
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10025732 [exp]	7.5	0.9602
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019833 [exp]	7.5	0.9813
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	11.0	0.9693
AT4G33050		EDA39	embryo sac development arrest ...		Lus10014872 [exp]	11.7	0.9686
					Lus10000858 [exp]	12.2	0.9769
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	12.6	0.9741

Compare expression of checked genes

Lus10006105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.