Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32040 641 / 0 Major facilitator superfamily protein (.1) AT1G79710 179 / 2e-49 Major facilitator superfamily protein (.1) AT5G25050 160 / 8e-43 Major facilitator superfamily protein (.1) AT5G25040 147 / 4e-38 Major facilitator superfamily protein (.1.2.3) AT5G10820 127 / 2e-31 Major facilitator superfamily protein (.1) AT1G64890 101 / 8e-23 Major facilitator superfamily protein (.1) AT5G54860 94 / 3e-20 Major facilitator superfamily protein (.1) AT1G04570 69 / 5e-12 Major facilitator superfamily protein (.1) AT2G33280 62 / 5e-10 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010565 [exp] 1020 / 0 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10026893 [exp] 180 / 7e-50 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 176 / 2e-48 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 171 / 1e-46 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 169 / 6e-46 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 144 / 1e-36 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 96 / 1e-20 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10024529 [exp] 82 / 1e-16 AT1G64890 355 / 2e-120 Major facilitator superfamily protein (.1) Lus10023708 [exp] 62 / 5e-10 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085900 [exp] 686 / 0 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 177 / 5e-49 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 163 / 1e-43 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 162 / 2e-43 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 159 / 2e-42 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 139 / 3e-35 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 132 / 1e-32 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 111 / 4e-26 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.013G076300 [exp] 105 / 6e-24 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 105 / 8e-24 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10006106 pacid=23174763 polypeptide=Lus10006106 locus=Lus10006106.g ID=Lus10006106.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCGTCTTGTTCGTTTGCAACAATTTCAGCAATCTGGATCTTACCTTCACAATCCCTGCGAAATTTGCCTTTCCCTTCCACATCCTCTTCTT CCTCCTCCTGCTGTTATCGCTTACACGCTCATTCTAAGTCTCTTCCTCAGATAGCACTTCGTCAAACTCGACGGAGGGCGCGCCGGAGACCTCCTGAGAA TCAGGAAATGTCTTCCATCCCTATGATCGCTCCGGCTCATCGCCGTGACAAAAGCGACGAACCGTTTCTCAATTCTATAAATAGTTCGGGTAAAGGGGAA ATTCTAACTACAGAACCCGAGTTACAAGCAACTTCCACCAGCAAGAATGTTCCACGTAAGAGTGTGTATAATGGCAGCAGAATCAAATGCTTTGGGGTGG AGTTGTCTCCGGATAATATTGCAGTTGCAATGGTGTACTTTGTCCAAGGTGTTCTTGGGCTGTCCAGGCTTGCTGTTAGCTTTTACTTGAAAGATGATCT GCATTTGGATCCTGCAGAGACAGCTGTGATATCCGGCTTCTCAGCATTGCCATGGCTTGTTAAACCACTTTATGGATTTATCAGTGATTCTGTTCCACTT TTTGGTTATCGAAGAAGGTCGTATTTGGTCCTTTCAGGCCTACTTGGTGCACTTTCTTGGAGTTTGATGGCTACCTTGGTTGACGATAAATATGGCGCTT GTCTATGTATACTTCTAGGGTCACTTTCAGTTGCTTTCTCTGATGTTGTAGGTATCTTCAACTTTTTAAAGGTGGAATTGTTGAATAGTTCTGAAAGAAG AACAGTTGTGGATTCCATGGTTGTCGAGAGAGCTCGTGGTGAGTCACAAAGCACGTCAGGATCTCTTCAATCCTTATGTTGGGGTTCTTCAGCTTTTGGG GGAATTGTTAGTTCCTACTTTAGTGGTTCACTGGTAGATGCTTATGGTGTAAGGTTTGTTTTTGGCGTCACAGCTCTCCTACCACTATTAACATCAGCTG TTGCTGTCCTTGTGAAAGAGCAACCTGTACATGTTTCTTCCCGGGGAAATAATCTTGCTCTTACCGGTCCTGGGTTTCTGGAAAACTCAAAGCATCATGT TATTCAGTTGTGGGGTGCTGTTAAGCAACCCAATGTATTTCTTCCCACGTTGTTCATCTTCCTGTGGCAGGCAACACCACATTCGGACTCGGCCATGTTT TACTTCACCACAAACAAACTTGGTTTTACCCCGGAATTTCTTGGGCGCGTGAAGCTTGTTACATCAGTTGCTTCATTGACCGGGGTGGGACTCTATAATG GATTTCTGAAGAACGTCAGCTTCCGCAAGATATTTCTTGGAACAACCATAATTGGCACGGCTCTTGGAATGACTCAGGTGCTTCTGGTAACAGGGTTCAA TAGGAAAATGGGCATCAGTGATGAGTGGTTTGCAATCGGAGATTCCCTAATTCTAACAGTCCTCGGTCAGGCTTCTTTCATGCCTGTTCTGGTGCTAGCT GCAAAACTATGTCCAGAAGGAATGGAAGCAACACTGTTTGCAACTCTCATGTCCGTATCAAATGGAGGAAGCGTCCTTGGAGGGCTGATTGGCGCTTTCC TCACTCAGGTTCTTGGGGTAACAAGGGACAGTTTCGACAACTTGGCGGCACTGGTCATCCTCTGCAATCTCAGCTCGCTGTTGCCTTTACCATTCATTGG CCTCCTCCCCAATGATACAGCTGATTCCACTTCAAAGGAAACTGACGACATAGAGATGAAATCCAATTGA
AA sequence Show only first row Show all	>Lus10006106 pacid=23174763 polypeptide=Lus10006106 locus=Lus10006106.g ID=Lus10006106.BGIv1.0 annot-version=v1.0 MASSSCSFATISAIWILPSQSLRNLPFPSTSSSSSSCCYRLHAHSKSLPQIALRQTRRRARRRPPENQEMSSIPMIAPAHRRDKSDEPFLNSINSSGKGE ILTTEPELQATSTSKNVPRKSVYNGSRIKCFGVELSPDNIAVAMVYFVQGVLGLSRLAVSFYLKDDLHLDPAETAVISGFSALPWLVKPLYGFISDSVPL FGYRRRSYLVLSGLLGALSWSLMATLVDDKYGACLCILLGSLSVAFSDVVGIFNFLKVELLNSSERRTVVDSMVVERARGESQSTSGSLQSLCWGSSAFG GIVSSYFSGSLVDAYGVRFVFGVTALLPLLTSAVAVLVKEQPVHVSSRGNNLALTGPGFLENSKHHVIQLWGAVKQPNVFLPTLFIFLWQATPHSDSAMF YFTTNKLGFTPEFLGRVKLVTSVASLTGVGLYNGFLKNVSFRKIFLGTTIIGTALGMTQVLLVTGFNRKMGISDEWFAIGDSLILTVLGQASFMPVLVLA AKLCPEGMEATLFATLMSVSNGGSVLGGLIGAFLTQVLGVTRDSFDNLAALVILCNLSSLLPLPFIGLLPNDTADSTSKETDDIEMKSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32040			Major facilitator superfamily ...		Lus10006106 [exp]	0	1
AT5G03880			Thioredoxin family protein (.1...		Lus10017034 [exp]	3.9	0.9093
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10024330 [exp]	7.3	0.8997
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	9.3	0.9013
AT5G08050			Protein of unknown function (D...		Lus10040515 [exp]	15.2	0.8778
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10040841 [exp]	15.4	0.8908
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Lus10034016 [exp]	15.6	0.8751
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10029841 [exp]	23.5	0.8746
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10009541 [exp]	24.0	0.8794
AT3G59780			Rhodanese/Cell cycle control p...		Lus10027050 [exp]	25.0	0.8787
AT1G02475			Polyketide cyclase/dehydrase a...		Lus10009629 [exp]	26.5	0.8013

Compare expression of checked genes

Lus10006106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.