Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22540 149 / 1e-47 Protein of unknown function (DUF1677) (.1) AT4G14819 139 / 6e-44 Protein of unknown function (DUF1677) (.1) AT5G25840 89 / 2e-23 Protein of unknown function (DUF1677) (.1) AT1G72510 89 / 3e-23 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) AT1G79770 87 / 2e-22 Protein of unknown function (DUF1677) (.1) AT1G54095 76 / 3e-18 Protein of unknown function (DUF1677) (.1) AT2G25780 75 / 5e-18 Protein of unknown function (DUF1677) (.1) AT5G20670 74 / 1e-17 Protein of unknown function (DUF1677) (.1) AT2G09970 74 / 3e-17 Protein of unknown function (DUF1677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010564 [exp] 208 / 5e-71 AT3G22540 151 / 1e-48 Protein of unknown function (DUF1677) (.1) Lus10008118 [exp] 97 / 2e-26 AT1G72510 157 / 1e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10037569 [exp] 96 / 4e-26 AT5G25840 173 / 1e-55 Protein of unknown function (DUF1677) (.1) Lus10011427 [exp] 96 / 7e-26 AT5G25840 172 / 5e-55 Protein of unknown function (DUF1677) (.1) Lus10013156 [exp] 93 / 9e-25 AT1G72510 157 / 2e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10037683 [exp] 83 / 7e-21 AT1G72510 134 / 2e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10015670 [exp] 81 / 3e-20 AT1G72510 139 / 7e-43 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10006044 [exp] 73 / 8e-17 AT5G25840 175 / 2e-56 Protein of unknown function (DUF1677) (.1) Lus10000571 [exp] 73 / 9e-17 AT5G25840 174 / 9e-56 Protein of unknown function (DUF1677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086000 [exp] 156 / 1e-50 AT4G14819 136 / 3e-43 Protein of unknown function (DUF1677) (.1) Potri.008G154500 [exp] 156 / 1e-50 AT3G22540 133 / 1e-41 Protein of unknown function (DUF1677) (.1) Potri.001G166900 [exp] 97 / 1e-26 AT1G72510 190 / 2e-62 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.003G067800 [exp] 94 / 2e-25 AT1G72510 194 / 5e-64 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G237300 [exp] 92 / 1e-24 AT2G25780 122 / 6e-36 Protein of unknown function (DUF1677) (.1) Potri.001G188700 [exp] 91 / 5e-24 AT1G79770 157 / 2e-49 Protein of unknown function (DUF1677) (.1) Potri.003G050200 [exp] 91 / 7e-24 AT5G25840 152 / 3e-47 Protein of unknown function (DUF1677) (.1) Potri.006G219100 [exp] 83 / 2e-21 AT1G72510 131 / 7e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G140600 [exp] 81 / 3e-20 AT5G20670 147 / 5e-46 Protein of unknown function (DUF1677) (.1) Potri.015G031700 [exp] 72 / 2e-17 AT4G14819 75 / 5e-19 Protein of unknown function (DUF1677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07911 [flax] [poplar] DUF1677 Protein of unknown function (DUF1677)
Representative CDS sequence Show only first row Show all	>Lus10006107 pacid=23174783 polypeptide=Lus10006107 locus=Lus10006107.g ID=Lus10006107.BGIv1.0 annot-version=v1.0 ATGGAGATTGAATCTGTGAAGTGCGAGTGTTGCGGGCTGGAAGAAGACTGCACCCAAGACTACATCTCCCAAATCAGATCCACTTTCGACGACAAATGGC TATGTGGGCTCTGCTCCGAGGCAGTCAGGGATGAAGTCATTAGAGGGAATCGTAACAAGAAAGCTACAGGAGCTGGCGGGATGGAGGAAGCTGTCAGAGC TCACATGTCCTTCTGCGGTAAGTTCAATGCCAACCCGGCGGTTCAAGTCGCCGATGGAATGAGGCAGATGCTCAGGAGACGCTCTGGGGATATGAATATG AATCCTTCTTCCTCTCCTCCTCCTCCTAATTCTTCTTCTTCCAAGAATAAGTACTCCAGATCCGCTACCACCAGACTTTACTAA
AA sequence Show only first row Show all	>Lus10006107 pacid=23174783 polypeptide=Lus10006107 locus=Lus10006107.g ID=Lus10006107.BGIv1.0 annot-version=v1.0 MEIESVKCECCGLEEDCTQDYISQIRSTFDDKWLCGLCSEAVRDEVIRGNRNKKATGAGGMEEAVRAHMSFCGKFNANPAVQVADGMRQMLRRRSGDMNM NPSSSPPPPNSSSSKNKYSRSATTRLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22540			Protein of unknown function (D...		Lus10006107 [exp]	0	1
AT4G30400			RING/U-box superfamily protein...		Lus10015502 [exp]	2.8	0.7279
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10005772 [exp]	4.0	0.7784
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	5.5	0.8046
AT3G17090			Protein phosphatase 2C family ...		Lus10017061 [exp]	5.7	0.7077
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10018219 [exp]	5.9	0.8074
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10029050 [exp]	8.1	0.6579
AT3G11590			unknown protein		Lus10013312 [exp]	23.8	0.8057
AT5G50335			unknown protein		Lus10001469 [exp]	25.3	0.7742
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10026922 [exp]	34.1	0.6732
AT5G50335			unknown protein		Lus10008207 [exp]	38.1	0.7171

Compare expression of checked genes

Lus10006107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.