Plant FIBer expression Database

Lus10006108 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05430 75 / 8e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010563
[exp]
375 / 3e-132 AT1G05430 71 / 4e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G086300
[exp]
161 / 9e-49 AT1G05430 70 / 4e-14 unknown protein
Potri.008G154200
[exp]
151 / 7e-45 AT1G05430 69 / 8e-14 unknown protein
PFAM info
Representative CDS sequence
>Lus10006108 pacid=23174775 polypeptide=Lus10006108 locus=Lus10006108.g ID=Lus10006108.BGIv1.0 annot-version=v1.0
ATGGGTGCAGCTCTTCTCGAGCTCGAGCATTCCCTCAGATCCCAGAAGAAATACTTGACTGCTCAAGAAGCAGACTTACTCCAAGTGTGCAAGAGCAATG
CTTTAAGGGCACTTACCTTTTTCTCATTGGTTGGAGCTTCTACTGCTTTGGGAGCAACATGGAAGCTGAGTACGACTCTACGGGTAAATATCGCAGCAGG
AGTTGCTGGTGTCATGGGATATTGGGGATGTAATCGTTCCCTTGACTCTTCTGTTGAGCATATATTGTCGAGAGACGGAAGTCGCTTACAGAGAGAGCTG
GCAACTATAATGGTGACAAGGCATGGACATGCAGCATGGACCAGACGAATTCTGAGCAAACGGTTCTACATGGAGACTGTTTTTGATGACTCAAGCCCGC
ATGAAGTTAATCTCAGGTGGCGCTACCGAATGCACTCTGGGGTTGTTATTCCTAATGATGGACAGCATTCTGGTGATCCAAAGCCACCTGACAATGACTA
CAACAATAATTCTCAGGCAGAGTCTGATACTAAGACAGTTGATCTGAAGCCAAAGCAAGTTGATGCAAGTCCACAAATGCCAAACTCTAAATCTCATCAT
GCTGACATAACAGAAGACCCTATTGATAGGCTCTTTGGGTCGGTGGCACCACTGGAGGAGATCCATCACCCTGCTACTCCTGCTCCTGCTACCAGAGCTC
AACATCGCAGTCATAGAAGATCTCATCGTGCTAGGCGTAGAATGCGCCATTATGAAGCTCCCCTGTGA
AA sequence
>Lus10006108 pacid=23174775 polypeptide=Lus10006108 locus=Lus10006108.g ID=Lus10006108.BGIv1.0 annot-version=v1.0
MGAALLELEHSLRSQKKYLTAQEADLLQVCKSNALRALTFFSLVGASTALGATWKLSTTLRVNIAAGVAGVMGYWGCNRSLDSSVEHILSRDGSRLQREL
ATIMVTRHGHAAWTRRILSKRFYMETVFDDSSPHEVNLRWRYRMHSGVVIPNDGQHSGDPKPPDNDYNNNSQAESDTKTVDLKPKQVDASPQMPNSKSHH
ADITEDPIDRLFGSVAPLEEIHHPATPAPATRAQHRSHRRSHRARRRMRHYEAPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G05430 unknown protein Lus10006108
[exp]
0 1
AT5G09250 KIWI ssDNA-binding transcriptional ... Lus10039207
[exp]
1.0 0.8203
AT3G17590 CHE1, BSH BUSHY GROWTH, transcription re... Lus10005562
[exp]
2.4 0.7982
AT5G39510 ZIG1, SGR4, ATV... SHOOT GRAVITROPSIM 4, VESICLE ... Lus10000565
[exp]
3.0 0.7976
AT1G77280 Protein kinase protein with ad... Lus10024154
[exp]
6.2 0.7720
AT3G24150 unknown protein Lus10043262
[exp]
7.5 0.7805
AT4G35140 Transducin/WD40 repeat-like su... Lus10023993
[exp]
8.1 0.7755
AT5G08630 DDT domain-containing protein ... Lus10029550
[exp]
10.7 0.7908
AT2G45490 ATAUR3 ataurora3 (.1) Lus10020580
[exp]
11.8 0.7971
AT1G16570 UDP-Glycosyltransferase superf... Lus10026065
[exp]
13.0 0.7829
AT5G17620 unknown protein Lus10001340
[exp]
13.2 0.7882

Lus10006108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.