Plant FIBer expression Database

Lus10006109 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54520 42 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004903
[exp]
103 / 7e-27 ND /
Lus10015939
[exp]
42 / 0.0003 AT1G54520 437 / 5e-153 unknown protein
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07466 DUF1517 Protein of unknown function (DUF1517)
Representative CDS sequence
>Lus10006109 pacid=23174785 polypeptide=Lus10006109 locus=Lus10006109.g ID=Lus10006109.BGIv1.0 annot-version=v1.0
ATGGCTTCCGGATATCACCTCTCCTCCCTTGCTTCCCCGCCGCTGCTTCCTGACGGCGATTATCTTAATATCAATGGAACCATAAAGAGAAGAAGAGGAA
GGAAAGCAACTATTCTCAAGATTCAGGTTATGTTATCGGATAGAGCCGGAGATGTTGGAAGTGTCCTCCTAGACGTTTTTCGAACCAATAGTCGAACACA
ATCACAAACCCCCATACTCAAAGGAACCATTAATGCGTTGTTGAAGCACCAAAAGAGCTTCATCTATGCCTCCGCATCTGTGATTCCCCATCAAAGAAAC
ATCTGGATCATGGATTTTATGAAGAAACAAGAGGAAAAGTTGAATATCCGTAGGGACATAATTGAGAATGGTCAACAAGTGCCTATGCTACCTCCCAAAC
AGAACAAAGATAACACTCTGGTGATAATAATGGCGGCTGCTGATGGTGTTCACAATCTTCCCTCTGTTTATAATAGCGAGGGTGTGAAAGAAGCACTCAG
CTATCTGGATACCAAACTTCCCATAATCCTGGCTGCTGATGTGATATGGAGTAATCAAGACCCTCTGCTACTACAGGAGTTGCTGGAGATTTTCCCTGAC
CTCAACTCCATCTATGCTTGA
AA sequence
>Lus10006109 pacid=23174785 polypeptide=Lus10006109 locus=Lus10006109.g ID=Lus10006109.BGIv1.0 annot-version=v1.0
MASGYHLSSLASPPLLPDGDYLNINGTIKRRRGRKATILKIQVMLSDRAGDVGSVLLDVFRTNSRTQSQTPILKGTINALLKHQKSFIYASASVIPHQRN
IWIMDFMKKQEEKLNIRRDIIENGQQVPMLPPKQNKDNTLVIIMAAADGVHNLPSVYNSEGVKEALSYLDTKLPIILAADVIWSNQDPLLLQELLEIFPD
LNSIYA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G54520 unknown protein Lus10006109
[exp]
0 1
AT3G07970 QRT2 QUARTET 2, Pectin lyase-like s... Lus10042371
[exp]
3.9 0.9283
AT4G28380 Leucine-rich repeat (LRR) fami... Lus10017713
[exp]
4.6 0.9185
AT5G22460 alpha/beta-Hydrolases superfam... Lus10020604
[exp]
4.9 0.9137
AT5G01930 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl ... Lus10022729
[exp]
5.5 0.9246
AT1G56140 Leucine-rich repeat transmembr... Lus10031777
[exp]
10.2 0.8974
AT5G07830 ATGUS2 glucuronidase 2 (.1) Lus10036963
[exp]
10.5 0.8419
Lus10001533
[exp]
11.0 0.9072
AT2G40190 LEW3 LEAF WILTING 3, UDP-Glycosyltr... Lus10021233
[exp]
12.4 0.8922
AT5G46090 Protein of unknown function (D... Lus10013933
[exp]
12.6 0.8969
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Lus10032424
[exp]
13.9 0.9028

Lus10006109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.