Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14920 761 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 696 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G36740 441 / 4e-133 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 405 / 5e-120 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G14980 322 / 3e-91 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G58610 244 / 8e-66 PHD finger transcription factor, putative (.1) AT2G37520 169 / 1e-42 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 161 / 4e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 153 / 3e-37 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 138 / 1e-32 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010562 [exp] 2404 / 0 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042602 [exp] 537 / 5e-164 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10022053 [exp] 516 / 1e-156 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042283 [exp] 233 / 1e-61 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10015266 [exp] 228 / 6e-60 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 216 / 7e-58 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 207 / 3e-55 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 192 / 5e-51 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10025315 [exp] 166 / 2e-41 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087700 [exp] 1208 / 0 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 1127 / 0 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 572 / 4e-178 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 549 / 9e-171 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 364 / 1e-104 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 323 / 2e-96 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.009G072600 [exp] 246 / 6e-66 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 236 / 7e-64 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.006G083600 [exp] 167 / 5e-42 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 142 / 4e-34 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10006110 pacid=23174769 polypeptide=Lus10006110 locus=Lus10006110.g ID=Lus10006110.BGIv1.0 annot-version=v1.0 ATGGAAGAGAGGAGGAGATCCGGTGAACCGGCTGGGTACGTTGTAAAAAACAAGGGCCCATCTGGTTGTTTGATCGTGAAAAAGAAAGGCAGTGATGGTG TTGGTCCTTCTGGTTCGCGGAAGGTTCTCGAATCGAAGAAGAAAAAAAAGAGGCCCAGGATGGATTTCAGCGATTCGGGATCCAGTGACGAGCTGTTAAT GCAGCCGCATAGAAGGTTAGCTCCTCAAACTTTTCGAAATTCTAAAGCTGTGGGTGATTTTGATATGAGTAGCGAAGATGACAGTGGAATTGGTAGGAAG AGGAACAGGGGAGAAGTTAGTCGGCGTGGTGAGATGGATGTCACTGATAGAGATAGGGATAACTTAATTGAGGGGACCAGGTTGAATGTGTATGATTTCG ACGAGTATGAGGGGAATGCAGCGGACATGAGAAGGATCAGACAGTCTGGAAACGGTGCGATTGATAGTCGCAGATTGTTTGGCTCAATGCCTGTTGGTAG AAGTAGCCTCGAGAGAGACTATGATTCTGGTTCAAGTAGAGATGCTTTTCATGAAAAGAGAAAGGGTTCATACTTTGACAAAGCCAGTGGTTTGGCTCGT GGTGATCATTCTGGTAGAGAGGGAGTTCGGCTTCCGATTCCAGCTATGAGGGATAACTATGACTCGGATAAACCAATTCGGGTTCAAGGTAAAAATGGCG TTCTAAAGGTTATGGTGAACAAGAAAAAGAAGGTTGATGAGCCTTTCATTGGTTACAACAATGCCTTGGAGCCTGGGAAAATAAGGAAGGGCGGGACAGT AGAAACTGCCAAGAAGAATGTTCCACTGCCTCCATCATATTACCCGGTGTCTAAAAAAGTTGAGAAAGCCATTCCATTTGTTGGGAGGGAGAAAACACGG ATAAATCTGCTAAATTCAGTGAAAAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTGATGATGATGCGAGTGACCGTGATTCTGATGATAGTGATG CGTTGTTGACAAAGAACGCTAAGATGAGAGCCAAGGATATAGAACCTCGTAATTTTCAGAAGACCCCATTATACACAAAGATAAGTAAAAGCGCTGACAT GAATTCTGATGACAGTGATACTTCCTTGAAGCAGGGACAGAGGAGTGCTGCAACTCCTAAATCAACAAAGAGGACAAGTGGTGGAGTCGAGAAAAGTACG CCTAAACAGCTCCCAACTAGTAAAAGCAATGAAGGAAAATCAAAGCGTGGTTCAGGCACTGAAAAGCAAAAGTTGCGCGAAAAAATTAGGGGGATGCTTA TAGATGCTGGCTGGACAATCGATTACAGGCCCAGGAGGAACAGAGACTATCTAGATGCTGTTTACATAAACCCTGCAGGAACAGCTTATTGGTCTATCAT CAAGGCTTATGAAGCTCTTCTAAAGCAGCAAAAGGAAGACGAAGATGTTGCAAGAGCTAAGATGGCCTCTTCTCCATTTACACCACTATCAGATGACCTG CTCAGCCAACTGACAAGGAATACTAGGAAAAAAATGGAGAAAGAAATGAGAAAGAAACAAAGAGACAGCCGCAAGAATGAGAATGCAAGGGAAACCATGG GGAGAAAGGCATCAAGTAGTAGGTATGATGAAGAGAGCATGGACAGCGACAGTCATGAAGAGAAGTTGAGCTCCTTCGTAAAGCAAGGTAGTAAGCCATC TAAGGGAAATAGTTATCGTGACAGTTCTGCCAGTGTAGGTCAGAAATCGATGAACAATTTACCTGAAAACAATGAGAACTTGTCCTCTGGGTATACTAGT CACCATGGTAGGAAAAGCAGAAAACTAGGTCGATGCACCTTACTAGTACGCAAGTCTAATCAGGATTTGAACTCAGATGGAGATGGGTTTGTACCTTATA CCGGGAAAAGAACATTACTTTCCTGGCTAGTTGACCGTGGAGCTGTGCAGTTGAGTCAAAAGGTAAGATACATGAATAGGAGACGGACAAAAGTCTTGCT GGAGGGCTGGGTCACAAGAGATGGCATCCATTGTGGCTGCTGTAGTAAAATCCTTACAGTTTCTAAGTTTGAGATCCATGCAGGAAGTAAACTCCGTCAA CCCTTTCAAAACATATATCTCGATTCTGGGGTTTCTCTTTTGGATTGCCAGATTGATGCATGGAATAGACAAGAGGCTGCAGAGAATATTGGTTTTCACT CGGTAGATATTCACGGTGATGATCCAAATGATGATACTTGTCCCCTTTGTGGCGATGGTGGAGATTTGATATGCTGTGATGGTTGTCCATCAACGTTTCA TCAGAGCTGTCTGGGCATTGAGATGTTACCACCAGGCGACTGGCATTGCCCAAACTGCACGTGCAAGTTTTGTAGGGCAGCTAGTTACAATGTGGTGAAT GAAGATGATCCAACTGTTTCAGCACTTCCGACTTGCAGACTCTGTGCCAGAAAATATCATGAATCCTGCATGAAGGATTTGGATGCTGCAACAGTTGAAG GTGATAGTTCTAAATCTTGGTTCTGTAGCGGAAACTGCAGTGAGCTCCATGAGCGGTTGTTGAAGTATACGGGAGTCAAACACGAGTTGGAAGCAGGATT TTCATGGTCTATTATTCGGAGAGCAGACTTTGACTTGGACACATCAGTTCAGGGACTCCCTCAAAGGGTCGAGGGGAATTCAAAGCTGGCTGTGGCTTTG TCTGTAATGGATGAATGCTTTTTGCCAATAATTGACAGGAGGAGTGGAATAAACTTGCTCCATGGTGTTCTTTATAACTGCGGGTCAAATTTTAATCGGC TGAACTACAGTGGATTCTTTACTGTTATCTTGGAGAGGGGTGATGAAATAATTTCTGCTGCGTCCCTAAGACTGCATGGGACAGAATTGGCAGAGATGCC ATTCATTGGAACTCGTCACATATATAGGCGGCAAGGGATGTGCAAGCGGCTTTTCTGTGCTGTTGAATCGGCACTCCGCTCTTTTAAGATTGAGAGACTA ATTATACCAGCAATTTCTGAACTAATGCGTACTTGGATGGAGGTGTTTGGCTTCACTAAACTTGATGAATCCCTTACCCAAGAACTGAAGTCGATGAACA CTATGGTGTTTCCTGGTGTGGATATGCTTCAGAAGCAGTTACTTGAACAAGGAAATGTGGAGAATATGAACACTAGTAATGGTGAGGACGAAAAGGAATC TCTGGGTGATAAGTGTGTGGCTGAATCAAAACAATCTAATAGTGATTCTTCCGCTGGACATGATAACCATGAAAGTGATAATGGTGGTCTGGAACAATAT AATGAGGGGAAAATCGGATCGGCTAGTACAAAGTTAGATTCATTGCTTCCAGATGCTTCAGTAACTGGTGTCTCTGCAAATAGCTCTTTGGATGCTTCCC ATGAACGTAAGCAGACTATGAGTTCAGATTCAGGATTTGTGGACAAATTGGATAAATCTGGAACAGACAAGGAGAATCTAGTTGATTGTCACACAAGCTC CAGGGAACCTGTCATTAATACGATATCAGCAGGAAATTATTCTGGGGAAGATGATATTTCTTCTCATGCTGCGCTTAATGACCAGTTTCTTGGGGTTCCC TCGGATAACGTCTCTGAGATGAGTGGCTCAATAGATGCTTATGATGGAAATGAACGTCCAGTAGATTGCAAGCCAGTTAAGCTAGCGGATTCCGATCTAG CTGCCCCGGTAGATGAATCTGCTTCTGTTGCAAACCACTTCGAGAGTAATAGCAATTTGTGTAAGGATGGTTATACTGACCATGTTCAAGCATTCAATCT CAGCGACTCCACTTCTGAGGGATATAAAGGTTCATTATCTACCGAACAAACTAAATCGGGTGGTTTCCGAAAAGAAGACAAAGTACCTGACGTCACTTCT GAGATTAAGTGCCCTCCTAGCTATATGATGAGTAATCATTCTGATGAGATGGAAGTAGATCCCCCATTGGATGACGATACTGAGATATACAAGGAAGCCG ACTTAGCTGGTGCCTCTACAACAGACATCGACATGGCTGGCGTGAAAGGTGAGGGGATGGCTGTCGAAAATTTTGTCAGTGAGATGCATCCTATATCTCC AGAGCTGACCAAGGTTGATAGTCCCCAGAAGCAAGGCACATATCAAGCAGGATCTGGCCCTGGATCCGAAGCAGTAAATTGTGCAGCAAGTTTTCTACAT GAACCAGATCATGGTCCAGAGACCGATGCGAGTGAAGGCGAAACAGAATCCGAGTAG
AA sequence Show only first row Show all	>Lus10006110 pacid=23174769 polypeptide=Lus10006110 locus=Lus10006110.g ID=Lus10006110.BGIv1.0 annot-version=v1.0 MEERRRSGEPAGYVVKNKGPSGCLIVKKKGSDGVGPSGSRKVLESKKKKKRPRMDFSDSGSSDELLMQPHRRLAPQTFRNSKAVGDFDMSSEDDSGIGRK RNRGEVSRRGEMDVTDRDRDNLIEGTRLNVYDFDEYEGNAADMRRIRQSGNGAIDSRRLFGSMPVGRSSLERDYDSGSSRDAFHEKRKGSYFDKASGLAR GDHSGREGVRLPIPAMRDNYDSDKPIRVQGKNGVLKVMVNKKKKVDEPFIGYNNALEPGKIRKGGTVETAKKNVPLPPSYYPVSKKVEKAIPFVGREKTR INLLNSVKSAAAAAAAAASADDDASDRDSDDSDALLTKNAKMRAKDIEPRNFQKTPLYTKISKSADMNSDDSDTSLKQGQRSAATPKSTKRTSGGVEKST PKQLPTSKSNEGKSKRGSGTEKQKLREKIRGMLIDAGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYEALLKQQKEDEDVARAKMASSPFTPLSDDL LSQLTRNTRKKMEKEMRKKQRDSRKNENARETMGRKASSSRYDEESMDSDSHEEKLSSFVKQGSKPSKGNSYRDSSASVGQKSMNNLPENNENLSSGYTS HHGRKSRKLGRCTLLVRKSNQDLNSDGDGFVPYTGKRTLLSWLVDRGAVQLSQKVRYMNRRRTKVLLEGWVTRDGIHCGCCSKILTVSKFEIHAGSKLRQ PFQNIYLDSGVSLLDCQIDAWNRQEAAENIGFHSVDIHGDDPNDDTCPLCGDGGDLICCDGCPSTFHQSCLGIEMLPPGDWHCPNCTCKFCRAASYNVVN EDDPTVSALPTCRLCARKYHESCMKDLDAATVEGDSSKSWFCSGNCSELHERLLKYTGVKHELEAGFSWSIIRRADFDLDTSVQGLPQRVEGNSKLAVAL SVMDECFLPIIDRRSGINLLHGVLYNCGSNFNRLNYSGFFTVILERGDEIISAASLRLHGTELAEMPFIGTRHIYRRQGMCKRLFCAVESALRSFKIERL IIPAISELMRTWMEVFGFTKLDESLTQELKSMNTMVFPGVDMLQKQLLEQGNVENMNTSNGEDEKESLGDKCVAESKQSNSDSSAGHDNHESDNGGLEQY NEGKIGSASTKLDSLLPDASVTGVSANSSLDASHERKQTMSSDSGFVDKLDKSGTDKENLVDCHTSSREPVINTISAGNYSGEDDISSHAALNDQFLGVP SDNVSEMSGSIDAYDGNERPVDCKPVKLADSDLAAPVDESASVANHFESNSNLCKDGYTDHVQAFNLSDSTSEGYKGSLSTEQTKSGGFRKEDKVPDVTS EIKCPPSYMMSNHSDEMEVDPPLDDDTEIYKEADLAGASTTDIDMAGVKGEGMAVENFVSEMHPISPELTKVDSPQKQGTYQAGSGPGSEAVNCAASFLH EPDHGPETDASEGETESE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10006110 [exp]	0	1
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10009241 [exp]	1.7	0.9162
AT2G34930			disease resistance family prot...		Lus10016384 [exp]	4.1	0.8893
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	4.8	0.9226
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10006586 [exp]	6.2	0.9185
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10001147 [exp]	7.4	0.9035
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	7.7	0.9024
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10002955 [exp]	7.9	0.8970
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	11.0	0.9070
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10017680 [exp]	12.7	0.9013
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	13.0	0.8823

Compare expression of checked genes

Lus10006110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.