Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05385 197 / 2e-64 Psb27-H1, LPA19 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1) AT1G03600 44 / 2e-05 PSB27 photosystem II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010561 [exp] 169 / 7e-54 AT1G05385 74 / 4e-17 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1) Lus10037438 [exp] 44 / 2e-05 AT1G03600 184 / 4e-60 photosystem II family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152800 [exp] 219 / 5e-73 AT1G05385 201 / 9e-66 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1) Potri.002G056300 [exp] 49 / 4e-07 AT1G03600 202 / 5e-67 photosystem II family protein (.1) Potri.005G206200 [exp] 47 / 2e-06 AT1G03600 210 / 4e-70 photosystem II family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006111 pacid=23174782 polypeptide=Lus10006111 locus=Lus10006111.g ID=Lus10006111.BGIv1.0 annot-version=v1.0 ATGATGGTCGCCGCCGCCGCGAATCTTGGAGCGAATCCATGTGTTTCCGCCTCCGTCAAACCACCGAAGACTCGTTCAGAATACAAGACTTCTTGTAACC TGCACCCGTATCAAGTTAGGGCGACTAGTAGGCGAGAAGCGTTGGTATCTGGTGCTATCTCGTCTGTTTTGGTTCTGGCTCTGAACTGGATTCCTATCCC ATTATCCGCCAGAGCTGAAGAGGAGGTGGAGGAGGATAAGGATGAGGGAGCAATCGGCCTAATCAAATCGTTCCTCGATCCAAACGAGAAGACGAAATCT GGGAAACTTTTGCCCAAAGCTTACCTGAAGACAGCAAGAGAGGTGGTGAAGACCCTCCGAGAGTCTGTACAGGAAGATCCAAAGGACAATGCTAAGTTCA GGCGGACTGCCGATTCAGCCAAGGAATCCATTAGAGAGTATTTGAGCAATTGGAGAGGCCAAGACAAGGTTGTCGGCGAGGAATCGTACGTACTGCTAGA AAAGGCAATAAGATCACTGGCGAGCTTCTACTCAAGAGCAGGGCCATCTGCACCACTCCCGGAATCGGTCAAGTCCGAGATATTGGACGATTTGAAGACC GCCGAAGAATTTTTGTGA
AA sequence Show only first row Show all	>Lus10006111 pacid=23174782 polypeptide=Lus10006111 locus=Lus10006111.g ID=Lus10006111.BGIv1.0 annot-version=v1.0 MMVAAAANLGANPCVSASVKPPKTRSEYKTSCNLHPYQVRATSRREALVSGAISSVLVLALNWIPIPLSARAEEEVEEDKDEGAIGLIKSFLDPNEKTKS GKLLPKAYLKTAREVVKTLRESVQEDPKDNAKFRRTADSAKESIREYLSNWRGQDKVVGEESYVLLEKAIRSLASFYSRAGPSAPLPESVKSEILDDLKT AEEFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10006111 [exp]	0	1
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	3.0	0.8498
AT3G17020			Adenine nucleotide alpha hydro...		Lus10016900 [exp]	3.2	0.8384
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Lus10016011 [exp]	3.9	0.8207
AT3G10210			SEC14 cytosolic factor family ...		Lus10031044 [exp]	9.4	0.7914
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10042716 [exp]	9.6	0.8192
AT4G19390			Uncharacterised protein family...		Lus10037258 [exp]	11.2	0.7729
AT5G19540			unknown protein		Lus10023641 [exp]	13.0	0.8096
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	14.0	0.8126
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	17.5	0.8023
AT4G37440			unknown protein		Lus10014864 [exp]	18.0	0.7850

Compare expression of checked genes

Lus10006111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.