Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22440 669 / 0 FRIGIDA-like protein (.1) AT4G14900 651 / 0 FRIGIDA-like protein (.1) AT5G48385 164 / 3e-44 FRIGIDA-like protein (.1) AT5G16320 95 / 1e-20 FRL1 FRIGIDA like 1 (.1) AT1G31814 94 / 3e-20 FRL2 FRIGIDA like 2 (.1) AT5G27230 91 / 6e-19 Frigida-like protein (.1) AT5G27220 67 / 1e-11 Frigida-like protein (.1) AT4G00650 46 / 3e-05 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010560 [exp] 903 / 0 AT3G22440 714 / 0.0 FRIGIDA-like protein (.1) Lus10002146 [exp] 184 / 9e-52 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10008744 [exp] 184 / 1e-51 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Lus10042965 [exp] 129 / 9e-32 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10032466 [exp] 123 / 7e-30 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10032514 [exp] 85 / 4e-17 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10043012 [exp] 85 / 4e-17 AT4G00650 176 / 5e-50 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10022433 [exp] 72 / 3e-13 AT4G00650 202 / 7e-60 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10016738 [exp] 71 / 1e-12 AT4G00650 193 / 8e-57 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G153000 [exp] 746 / 0 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.018G078701 [exp] 236 / 5e-71 AT3G22440 189 / 4e-53 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 204 / 4e-59 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.014G175200 [exp] 196 / 4e-56 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.007G050800 [exp] 170 / 2e-46 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 144 / 2e-37 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.005G044000 [exp] 112 / 4e-26 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G043900 [exp] 111 / 1e-25 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 110 / 3e-25 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.005G044200 [exp] 74 / 1e-13 AT5G27220 129 / 5e-30 Frigida-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10006113 pacid=23174767 polypeptide=Lus10006113 locus=Lus10006113.g ID=Lus10006113.BGIv1.0 annot-version=v1.0 ATGACCAGCTGCACTCTTCTCTGGAAGGAGCTCTCCGACCACTTCACCACCCTCGAGAACAACCTCCAGAAGAAGTCCGATGCTTTGAAGCGCAAAATCC AGTCCCTCGACACTGAGACCAAGGCCTCCCTTGCTTCTCTAAAGAAGCGCGAAGTCACCATCGATGGCAGCGTCGAGATCGCCCTCGAGCGTCTCGACGA CCGCTGTGAGGCCGCTCTCAAGTCCATCCACTCCGATCACCCTGACGGCGATGTCGACGACGCCGAAGGACTCCTCCTCGCTCTCAAGGCCTTCTGCTTG AAGATGCGGTCCAGGGAGTTCTGGAACTTTGTGATTGCTAAGAAGAAGGAGTTGGACGGGCTGAGGAGCCAGCTTCCTATGGCGCTCGCGGAGTGCGTGG ATCCTCCTAGGTTTGTCCTGGAGGCTATCTCGGAGGTTTTTCCGGTTGATAAGAGAGGGGATAGGACCGAGAAAGGGAATGATTTGGGATGGGCCTGTGT TGTTATTCTTGAGAGCTTGATCCCCGTGGTTATGGACCCTGTGATTGGCAAGTCCAGGCTTATGGTCACCCCGAAGGTGAAGAAGAGGGCTAACCAGATT GCCGAGACATGGAAGAGGAGTTTGGAGGAGCGCGGTGGGATTGAGAATGTTAAGACTCCCGATGTTCATACTTTCTTGCAGCATTTGGTCACTTTTGGGA TTGTCAAGACGGAGGATTTTGACTTGTACAGGAAGCTTGTTGTCGGCTCTGCTTGGCGCAAGCAGATGCCTAAACTTGCTGTCTCTCTTGGCCTTGGTGA TGAAATGCCTGATATGATCCGAGAACTAATTGGTAGGGGACAGCAACTCGATGCGGTGCATTTCACATATGAGGTTGGTCTTGTTGATAAGTTCCCGCCT GTACCCTTGTTGAAGGCCTTTCTAAGGGATGCGAAGAAGGCTGCAGCGTCTATATTGGAGGATCCTGATAATCCTGGCAGGGCTACGCAACTTGCCGTGC GGAAGGAACAGTCAGCACTCCGGTCAGTGATCAAGTGCATTGAGGAATATAAACTCGAAGCCGAGTTCCCTCCGGAGAACCTCAAGAAACGCCTTGAGCA ACTGGAGAAGGTGAAGACCGAGAAGAGAAAGCCAGTTGCTGTGCCTGCAAACAAGAGAACCCGTGCAAGCACTGCTGGACCGATGCCTCCTGCCAAGGCT GGGCGTATGACAAATGCCTATGTATCCTCTTTCCCGACACCACCAACTTTCGTCAGGTCACCTTCACACCCTCAATACCCGGCTGCCGGGATACCAGCAT ACGCATCTCCACCACCACCACCACAAGCTGTATATGGCACCCCGAGCCCACAGTCTCCATACGCCTACTCCCCGGAAGCAGTCCACCATCCGATTCCCGG ATCATATACAATGAATTACCCACCACCGGGAGCGTATGGAGGATATGCAACAACAGGGTTTGCACCAGCTTATCATCAGCAGGCTTACTACTGA
AA sequence Show only first row Show all	>Lus10006113 pacid=23174767 polypeptide=Lus10006113 locus=Lus10006113.g ID=Lus10006113.BGIv1.0 annot-version=v1.0 MTSCTLLWKELSDHFTTLENNLQKKSDALKRKIQSLDTETKASLASLKKREVTIDGSVEIALERLDDRCEAALKSIHSDHPDGDVDDAEGLLLALKAFCL KMRSREFWNFVIAKKKELDGLRSQLPMALAECVDPPRFVLEAISEVFPVDKRGDRTEKGNDLGWACVVILESLIPVVMDPVIGKSRLMVTPKVKKRANQI AETWKRSLEERGGIENVKTPDVHTFLQHLVTFGIVKTEDFDLYRKLVVGSAWRKQMPKLAVSLGLGDEMPDMIRELIGRGQQLDAVHFTYEVGLVDKFPP VPLLKAFLRDAKKAAASILEDPDNPGRATQLAVRKEQSALRSVIKCIEEYKLEAEFPPENLKKRLEQLEKVKTEKRKPVAVPANKRTRASTAGPMPPAKA GRMTNAYVSSFPTPPTFVRSPSHPQYPAAGIPAYASPPPPPQAVYGTPSPQSPYAYSPEAVHHPIPGSYTMNYPPPGAYGGYATTGFAPAYHQQAYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	0	1
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10039105 [exp]	1.4	0.8552
AT3G15630			unknown protein		Lus10017768 [exp]	2.0	0.7995
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10032193 [exp]	3.5	0.8084
AT4G34100			RING/U-box superfamily protein...		Lus10019839 [exp]	6.7	0.7748
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	6.8	0.8342
					Lus10035796 [exp]	8.2	0.7316
AT5G20200			nucleoporin-related (.1)		Lus10019408 [exp]	8.2	0.7600
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	8.5	0.7779
AT5G57480			P-loop containing nucleoside t...		Lus10006968 [exp]	10.7	0.7552
AT3G57880			Calcium-dependent lipid-bindin...		Lus10012026 [exp]	11.7	0.7859

Compare expression of checked genes

Lus10006113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.