Plant FIBer expression Database

Lus10006114 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59650 204 / 2e-69 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010559
[exp]
249 / 2e-87 AT3G59650 201 / 2e-68 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2)
Lus10022178
[exp]
170 / 3e-52 AT3G59650 138 / 2e-39 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G126200
[exp]
195 / 7e-66 AT3G59650 202 / 8e-69 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF05047 L51_S25_CI-B8 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Representative CDS sequence
>Lus10006114 pacid=23174789 polypeptide=Lus10006114 locus=Lus10006114.g ID=Lus10006114.BGIv1.0 annot-version=v1.0
ATGGCCTTACGAGGCGTTTGGCAGCTGAAAAAGCTGGTTGTGAGCTACAGTGATTGGGGTGGAAGTAGCAGGGGGATCAGGGCATTCATGGAGTCGCACC
TCCCAACATTGAAAGCTGAGAATCCCCATCTGAAGGTGGAAACTGAACTGATTCGAGGCCAACACCCGCACTTAAAGGCCTTTTACAAAAACAACAATGA
AAGAGTGGTATGCGTGAGGAACATGACCCCAGATGAAGTATTACTGCATGCTACCAGGCTAAGGAATGCATTGGGAAGAAAGGTGGTAAAACTGAAGACA
AGACACGTTACCAAACACCCAAGTGTACAAGGTACATGGACAACGGGGCTGAAATTTGAGGAGGCATGA
AA sequence
>Lus10006114 pacid=23174789 polypeptide=Lus10006114 locus=Lus10006114.g ID=Lus10006114.BGIv1.0 annot-version=v1.0
MALRGVWQLKKLVVSYSDWGGSSRGIRAFMESHLPTLKAENPHLKVETELIRGQHPHLKAFYKNNNERVVCVRNMTPDEVLLHATRLRNALGRKVVKLKT
RHVTKHPSVQGTWTTGLKFEEA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G59650 mitochondrial ribosomal protei... Lus10006114
[exp]
0 1
AT3G12390 Nascent polypeptide-associated... Lus10026133
[exp]
1.0 0.9005
AT5G46920 Intron maturase, type II famil... Lus10003019
[exp]
2.2 0.8573
AT4G30220 RUXF small nuclear ribonucleoprotei... Lus10006867
[exp]
2.4 0.8860
AT4G30220 RUXF small nuclear ribonucleoprotei... Lus10037606
[exp]
2.8 0.8936
AT1G11240 unknown protein Lus10018438
[exp]
4.0 0.8830
AT5G09270 unknown protein Lus10004877
[exp]
5.2 0.8331
AT5G38890 Nucleic acid-binding, OB-fold-... Lus10004763
[exp]
6.5 0.8466
AT1G07950 MED22B Surfeit locus protein 5 subuni... Lus10023466
[exp]
10.6 0.8357
AT2G20490 NOP10, EDA27 EMBRYO SAC DEVELOPMENT ARREST ... Lus10033907
[exp]
11.0 0.8164
AT3G07640 unknown protein Lus10041098
[exp]
14.3 0.7770

Lus10006114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.