Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22450 231 / 7e-74 Ribosomal L18p/L5e family protein (.1) AT1G08845 109 / 2e-28 Ribosomal L18p/L5e family protein (.1.2) AT3G20230 96 / 1e-23 Ribosomal L18p/L5e family protein (.1) AT5G27820 59 / 1e-10 Ribosomal L18p/L5e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010558 [exp] 642 / 0 AT3G22450 238 / 8e-77 Ribosomal L18p/L5e family protein (.1) Lus10001727 [exp] 111 / 3e-29 AT1G08845 268 / 1e-92 Ribosomal L18p/L5e family protein (.1.2) Lus10004129 [exp] 110 / 2e-26 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10007379 [exp] 88 / 2e-20 AT3G20230 234 / 3e-79 Ribosomal L18p/L5e family protein (.1) Lus10020797 [exp] 88 / 2e-20 AT3G20230 238 / 1e-80 Ribosomal L18p/L5e family protein (.1) Lus10031487 [exp] 61 / 3e-11 AT5G27820 184 / 1e-61 Ribosomal L18p/L5e family protein (.1) Lus10015194 [exp] 61 / 3e-11 AT5G27820 184 / 1e-61 Ribosomal L18p/L5e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G153100 [exp] 357 / 1e-122 AT3G22450 253 / 2e-82 Ribosomal L18p/L5e family protein (.1) Potri.013G029300 [exp] 112 / 1e-29 AT1G08845 295 / 1e-102 Ribosomal L18p/L5e family protein (.1.2) Potri.013G108700 [exp] 98 / 3e-24 AT3G20230 226 / 6e-76 Ribosomal L18p/L5e family protein (.1) Potri.019G081000 [exp] 95 / 8e-23 AT3G20230 249 / 4e-85 Ribosomal L18p/L5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00861 [flax] [poplar] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence Show only first row Show all	>Lus10006115 pacid=23174786 polypeptide=Lus10006115 locus=Lus10006115.g ID=Lus10006115.BGIv1.0 annot-version=v1.0 ATGACAGCAGTCTCATTAAGACGAGCTAGCCGGCTGCTATCGCGGGTCTCCTTCCATTTCCAGTTGAAAACCTCCAGTTTCTGCTCCAAGGCTTCCGCAA CCAGCAATAGTTCACATGGCTGGACTAGAGAAGCTCCTACAGAAACTCGCCGTTCGACTCCCTATAGCAGCATTTCTCTGTTCAGGGATCCTACAGCTCA CTTAGACCGCTTTGATATCGAGCTCCTGGACAATGACACTTGGCAGGTATCTTCCAGCATAGCTCATGCGTATGGTGGAATTGGTAAGAACACGGAAGCA GAGACAGGGAATGAAGCATCGTCTAATCACCAGGTTAGTACACACCATTCCATGTCTGCTCCGGTCGACCCTGATTTTGACGAAATAGATAATATGAGGA TTCGGGGCAATCTGTTCTACAAGCTTGATCGCCATTCCAAAGAGTACCAGGAGTACAGCTATGATTTTCACAGAAGGAAGAAAAAAGGTGATGACGACGA GGTTAGAGGGAGCCAGAAGAAGGAATCTATAACCAATAATGAACAGCCCAAGGAAAGCAAAAGGAAGGAAGATTCTTTGGCTGTGGACACAAAAAAAAAG ACTTTTGTAGCTAAGGACGGAAAAGCATATTCTTTGTTAGGTGGCTCTGGTGGTATGGAGAAGAAGGTTAGAACTCCAACATTTAATCAGCTAACAGCTC CATACCACGAGCCATTCTGTCTCGACATTTTCATATCGAATGCATCGGTGAGTGCATCTGTTATTCATAGGGCCACTAGTAACGTGGTGGCTGTGGCACA CTCAATATCTAAGGACATCAAAATGGACCTGGGTTCCACTAAGAATGAAGCTACTTGTGCTGCTGTTGGGAAAATTCTAGCACAGAGAGCATTGGAGGAT GATATTCACAACGTTGTTTACACTCCTAGAAAAGGGGATAGATTGGAAGGAAAGCTTCAGATTGTGCTTCAATCCATTATTGATAGTGGCCTTTCTGTGA AAGTAAAACTGAAGCAAAGGAAACATAAGAAACCCAGTCTCCCCCATTCTGCTTAG
AA sequence Show only first row Show all	>Lus10006115 pacid=23174786 polypeptide=Lus10006115 locus=Lus10006115.g ID=Lus10006115.BGIv1.0 annot-version=v1.0 MTAVSLRRASRLLSRVSFHFQLKTSSFCSKASATSNSSHGWTREAPTETRRSTPYSSISLFRDPTAHLDRFDIELLDNDTWQVSSSIAHAYGGIGKNTEA ETGNEASSNHQVSTHHSMSAPVDPDFDEIDNMRIRGNLFYKLDRHSKEYQEYSYDFHRRKKKGDDDEVRGSQKKESITNNEQPKESKRKEDSLAVDTKKK TFVAKDGKAYSLLGGSGGMEKKVRTPTFNQLTAPYHEPFCLDIFISNASVSASVIHRATSNVVAVAHSISKDIKMDLGSTKNEATCAAVGKILAQRALED DIHNVVYTPRKGDRLEGKLQIVLQSIIDSGLSVKVKLKQRKHKKPSLPHSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22450			Ribosomal L18p/L5e family prot...		Lus10006115 [exp]	0	1
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10003590 [exp]	57.4	0.7895
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10002734 [exp]	157.5	0.7523
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10010896 [exp]	174.5	0.7478
AT5G06620		SDG38, ATXR4	SET domain protein 38 (.1)		Lus10013535 [exp]	205.0	0.7329
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10005913 [exp]	215.0	0.7289
AT5G27395			Mitochondrial inner membrane t...		Lus10035347 [exp]	215.5	0.7348

Compare expression of checked genes

Lus10006115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.