Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14890 187 / 9e-62 FdC2 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) AT2G27510 88 / 7e-23 ATFD3 ferredoxin 3 (.1) AT1G60950 78 / 5e-19 FED A, ATFD2, FEDA FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) AT1G10960 76 / 5e-18 ATFD1 ferredoxin 1 (.1) AT5G10000 73 / 4e-17 ATFD4 ferredoxin 4 (.1) AT1G32550 73 / 8e-17 FdC1 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010557 [exp] 293 / 2e-102 AT4G14890 188 / 5e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10020616 [exp] 88 / 7e-23 AT2G27510 172 / 9e-56 ferredoxin 3 (.1) Lus10004870 [exp] 87 / 2e-22 AT2G27510 165 / 5e-53 ferredoxin 3 (.1) Lus10043430 [exp] 84 / 4e-21 AT2G27510 179 / 3e-58 ferredoxin 3 (.1) Lus10034144 [exp] 83 / 8e-21 AT2G27510 179 / 1e-58 ferredoxin 3 (.1) Lus10015462 [exp] 77 / 2e-18 AT1G60950 182 / 8e-60 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10001369 [exp] 74 / 2e-17 AT1G60950 186 / 1e-61 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10004576 [exp] 73 / 2e-16 AT1G32550 248 / 6e-85 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) Lus10000483 [exp] 71 / 7e-16 AT1G32550 245 / 7e-84 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G153200 [exp] 228 / 5e-78 AT4G14890 193 / 2e-64 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.010G087300 [exp] 219 / 7e-75 AT4G14890 189 / 7e-63 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.004G202500 [exp] 87 / 4e-22 AT2G27510 164 / 3e-52 ferredoxin 3 (.1) Potri.009G163800 [exp] 80 / 9e-20 AT2G27510 167 / 7e-54 ferredoxin 3 (.1) Potri.008G020100 [exp] 79 / 2e-19 AT2G27510 180 / 5e-59 ferredoxin 3 (.1) Potri.001G470700 [exp] 76 / 4e-18 AT1G60950 174 / 7e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.010G239100 [exp] 75 / 1e-17 AT2G27510 175 / 7e-57 ferredoxin 3 (.1) Potri.003G015200 [exp] 71 / 4e-16 AT1G60950 176 / 2e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.003G090400 [exp] 69 / 7e-15 AT1G32550 257 / 3e-88 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) Potri.004G218400 [exp] 67 / 1e-14 AT1G60950 194 / 9e-65 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10006116 pacid=23174773 polypeptide=Lus10006116 locus=Lus10006116.g ID=Lus10006116.BGIv1.0 annot-version=v1.0 ATGGCTACCCACACTGTCCCTTTTGCTCCAACTCCTTCCATTCCTCTAACCAAAACAAAGCTGTGTACCAAATTTCCTTCCTGTACAGTCAACAACAGAA AAAGAAGGTCCCTAAAAACGGTGGTTCGATCTTACAAAGTAGTGATTGAGCATCAGGGTGAGTCCAGGGAGCTTGAAGTGGAGCCAGACGAGACCATACT ATCCAAGGCACTAGACTCTGGCTTGTCCGTGCCTCATGACTGCAAGCTTGGAGTTTGTATGACTTGCCCAGCTAAGGTTGTCAGCGGGACTGTCGATCAG AGCGAAGGTATGCTCAGTGATGACGTGGTGGACGGCGGCTATGCATTGCTTTGTGTTGCATATCCCACCTCTGATTGCCACATTAGAACCATTCCTGAGG AGGAGTTGCTCTCCCTCCAGCTTGCGACCGCTAATGACTGA
AA sequence Show only first row Show all	>Lus10006116 pacid=23174773 polypeptide=Lus10006116 locus=Lus10006116.g ID=Lus10006116.BGIv1.0 annot-version=v1.0 MATHTVPFAPTPSIPLTKTKLCTKFPSCTVNNRKRRSLKTVVRSYKVVIEHQGESRELEVEPDETILSKALDSGLSVPHDCKLGVCMTCPAKVVSGTVDQ SEGMLSDDVVDGGYALLCVAYPTSDCHIRTIPEEELLSLQLATAND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10006116 [exp]	0	1
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Lus10039589 [exp]	1.4	0.9483
AT3G55040		GSTL2	glutathione transferase lambda...		Lus10040347 [exp]	2.8	0.9317
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Lus10005337 [exp]	2.8	0.9406
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10000959 [exp]	3.5	0.9477
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10021693 [exp]	5.5	0.9416
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10021295 [exp]	7.7	0.9294
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10018579 [exp]	8.7	0.9391
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10010340 [exp]	8.9	0.9200
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	13.0	0.9247
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	14.5	0.9258

Compare expression of checked genes

Lus10006116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.