Plant FIBer expression Database

Lus10006117 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22480 197 / 5e-66 PDF2 prefoldin 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010556
[exp]
293 / 1e-103 AT3G22480 199 / 1e-66 prefoldin 2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G153900
[exp]
250 / 5e-87 AT3G22480 196 / 1e-65 prefoldin 2 (.1.2)
Potri.001G240200
[exp]
236 / 2e-81 AT3G22480 193 / 2e-64 prefoldin 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0200 Prefoldin PF01920 Prefoldin_2 Prefoldin subunit
Representative CDS sequence
>Lus10006117 pacid=23174762 polypeptide=Lus10006117 locus=Lus10006117.g ID=Lus10006117.BGIv1.0 annot-version=v1.0
ATGGCTGGCGGATCTGAGATGCAAGGGAAAGAGCCAGGAAATGAGCAGATGATAGCAAACATGTACACATCCATGAGATCTGAACTGAACCAGATTTACT
CCAAAATCACTGAACTGGAGATGGAAGTGAGCGAACACTCATTGGTCATGAACGCCATCCAACCACTCGACCCCAGCCGACGCTGTTACCGAATGATCGG
AGGTGTGCTTGTGGAAAGGAACATTAAGGAGGTGCTACCAGCCGTGCAGCGAAACAAAGAAGGAATCGAGGAAGTAATCTCGAGGCTGAATGAAGCCCTG
GAAAGGAAGAAGAAGGAGATCACCGATTTCGAAGCTAAATACAAGATCAGGATCAGGAAAGCTGATAACGAGGTGAAAGATGAAGGTAGCAAGAAGGAAG
GTGGCTCTCAGGGCGTCCTCGTCGGCCCTGCAGGTTCAAGCGAATGA
AA sequence
>Lus10006117 pacid=23174762 polypeptide=Lus10006117 locus=Lus10006117.g ID=Lus10006117.BGIv1.0 annot-version=v1.0
MAGGSEMQGKEPGNEQMIANMYTSMRSELNQIYSKITELEMEVSEHSLVMNAIQPLDPSRRCYRMIGGVLVERNIKEVLPAVQRNKEGIEEVISRLNEAL
ERKKKEITDFEAKYKIRIRKADNEVKDEGSKKEGGSQGVLVGPAGSSE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G22480 PDF2 prefoldin 2 (.1.2) Lus10006117
[exp]
0 1
AT3G53140 O-methyltransferase family pro... Lus10023892
[exp]
8.1 0.8930
AT2G19480 NFA2, NFA02, NA... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10011957
[exp]
8.9 0.8748
AT4G22000 unknown protein Lus10008487
[exp]
9.0 0.8919
AT1G03330 Small nuclear ribonucleoprotei... Lus10029641
[exp]
9.5 0.8795
AT2G32080 PUR ALPHA-1, PU... purin-rich alpha 1 (.1.2) Lus10001782
[exp]
14.4 0.8897
AT1G64385 unknown protein Lus10032376
[exp]
15.2 0.8886
AT4G33740 unknown protein Lus10020507
[exp]
15.4 0.8927
AT5G38660 APE1 acclimation of photosynthesis ... Lus10034073
[exp]
15.9 0.8740
AT4G07950 DNA-directed RNA polymerase, s... Lus10030228
[exp]
18.2 0.8651
AT3G22630 PRCGB, PBD1 20S proteasome beta subunit D1... Lus10021909
[exp]
19.4 0.8851

Lus10006117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.