Plant FIBer expression Database

Lus10006118 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14870 97 / 2e-25 SECE1 secE/sec61-gamma protein transport protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010555
[exp]
206 / 5e-68 AT4G14870 140 / 1e-42 secE/sec61-gamma protein transport protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G153400
[exp]
95 / 9e-25 AT4G14870 98 / 6e-26 secE/sec61-gamma protein transport protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00584 SecE SecE/Sec61-gamma subunits of protein translocation complex
Representative CDS sequence
>Lus10006118 pacid=23174777 polypeptide=Lus10006118 locus=Lus10006118.g ID=Lus10006118.BGIv1.0 annot-version=v1.0
ATGGCGCTCTCCTCCAACACACTGTCGCTCAAACATCCTTCCAAACCACTTCCACATCTCCATCAATCTCCCTCCAATCTTCGATCGCCCTCCTTTCCTC
TCAGATTCAAACCTCAATCTATCCGCAGCTATCCGTCGTTCAGCTCCCGACTCCCGAAATCGAGAAATGGAGTTTTCATCAGGAGAGCAGTGGAAGAGAG
CCAGGAGCAAACGGAATCGGAGCAACTCAACGAATCCAAAGCGAAGGCGGAGGCGAGACCACCGGAAAATCCTCGTGAACAAGACGCAGAACAAAGCGAT
TTGGGAGCTGAGATAAGGAAGGCGATGATGGAGAAGAAGAACGAAGAGAAAGCGGACGGCGGCGGAGATCTGTTTAACGGAGTTTCGGAAGAGGTTCGGG
AGATAGAATGGCCGTCTTTTGGCAAAGTTCTGGGAACGACCGGCGTAGTGCTTGGCGTCATTGCTGGCTCCAGCGTCGTTTTGCTTACCGTCAATGCCTT
ACTGGCCGAGCTCTCCGATAAGGTTTTCGTAGGAAGAGGCGTTCAGGATTTCTTCAGTTAG
AA sequence
>Lus10006118 pacid=23174777 polypeptide=Lus10006118 locus=Lus10006118.g ID=Lus10006118.BGIv1.0 annot-version=v1.0
MALSSNTLSLKHPSKPLPHLHQSPSNLRSPSFPLRFKPQSIRSYPSFSSRLPKSRNGVFIRRAVEESQEQTESEQLNESKAKAEARPPENPREQDAEQSD
LGAEIRKAMMEKKNEEKADGGGDLFNGVSEEVREIEWPSFGKVLGTTGVVLGVIAGSSVVLLTVNALLAELSDKVFVGRGVQDFFS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G14870 SECE1 secE/sec61-gamma protein trans... Lus10006118
[exp]
0 1
AT5G28750 Bacterial sec-independent tran... Lus10006588
[exp]
7.7 0.8414
AT2G37660 NAD(P)-binding Rossmann-fold s... Lus10010846
[exp]
7.7 0.8666
AT3G63410 VTE3, APG1, IEP... VITAMIN E DEFECTIVE 3, INNER E... Lus10024832
[exp]
13.8 0.8643
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Lus10006400
[exp]
14.9 0.8231
AT1G09900 Pentatricopeptide repeat (PPR-... Lus10037012
[exp]
19.5 0.8612
AT5G18660 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B R... Lus10037912
[exp]
22.6 0.8408
AT5G58560 FOLK farnesol kinase, Phosphatidate... Lus10031858
[exp]
26.1 0.8050
AT5G18660 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B R... Lus10038638
[exp]
30.7 0.8397
AT3G06050 PRXIIF, ATPRXII... peroxiredoxin IIF (.1) Lus10041218
[exp]
34.2 0.7816
AT5G45390 NCLPP3, NCLPP4,... NUCLEAR-ENCODED CLP PROTEASE P... Lus10007589
[exp]
39.3 0.8265

Lus10006118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.