Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22490 278 / 4e-94 Seed maturation protein (.1) AT3G22500 267 / 5e-90 ATECP31 LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31, Seed maturation protein (.1) AT1G03120 115 / 1e-31 ATRAB28 responsive to abscisic acid 28 (.1) AT5G27980 110 / 2e-29 Seed maturation protein (.1) AT5G53260 72 / 2e-15 Seed maturation protein (.1) AT5G53270 68 / 4e-14 Seed maturation protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010553 [exp] 413 / 2e-147 AT3G22490 302 / 1e-103 Seed maturation protein (.1) Lus10019001 [exp] 195 / 1e-61 AT3G22490 262 / 3e-88 Seed maturation protein (.1) Lus10042604 [exp] 160 / 3e-48 AT3G22490 234 / 5e-77 Seed maturation protein (.1) Lus10015948 [exp] 118 / 2e-32 AT3G22490 152 / 6e-46 Seed maturation protein (.1) Lus10022058 [exp] 91 / 7e-23 AT3G22490 98 / 6e-26 Seed maturation protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048000 [exp] 221 / 9e-72 AT3G22490 229 / 4e-75 Seed maturation protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04927 [flax] [poplar] SMP Seed maturation protein
Representative CDS sequence Show only first row Show all	>Lus10006121 pacid=23174779 polypeptide=Lus10006121 locus=Lus10006121.g ID=Lus10006121.BGIv1.0 annot-version=v1.0 ATGAGTCAGGAACAGCCAAGGAGGCCGCAACAAGGCAAGGATATTGATCCAATCAAGTACGGCGACGTTTTCGACGTTTCAGGAAAGCTTGCATCCAAGC TAATAGCCCCTGAAGATGCCAACATGATGCAAAGTGCGGAGACGATGGTGTTTGGGAAGACCCAGAAAGGAGGCCCTGCTGCAGCCATGCAAGCCGCAGC CACTTTCAACGAAAGAGCTGGCCTGGTTGGTCATCACCAGGCTACCGATGCGGCCAGCAACGAAGGTGTCTCGGTGACGGAGACCGACATCCCGGGTGCT CGGATAATAACAGAGAGCGTGGGCGGGCAGGTTCTGGGGCAATTCGTTCAACGAACTCCCGTCCTGGGTGTTGATGTAGACGTTGACGTCGTTGTGCAGG ATAAGATTACCATAGGAGAAGCCCTGGAGGCCACAGGGAGGACTTCGGGTGACAAGCCGGTTGATCAGAGCGACGCCTCGGCTATACAGGCAGCCGAGGC TAGAGCCACCGGGAGTAGTGTGACAGTACCCGGTGGGCTTGCGGCTGCAGCTCAGTCGGCTGCTACTTACAATGCTGGGTTGGACAGAGATGAGGCCAAG ATTAAGCTCAGAGATGTTTTGAGGGATGTGGCGGGGAAGTTGTCGGCGGATAAAGTGGTGACTCGAGAGGATGCGGAAGGAGTGGCGAGTGCGGAGATGA GGAACAACGCCAATGTGTCTACTAATCCTGCGGGGGTAGCTGCTTCCATGATTTCAGCTGCCAGGCTCAACCAGGATGTTGCTGGTGCCCCATAA
AA sequence Show only first row Show all	>Lus10006121 pacid=23174779 polypeptide=Lus10006121 locus=Lus10006121.g ID=Lus10006121.BGIv1.0 annot-version=v1.0 MSQEQPRRPQQGKDIDPIKYGDVFDVSGKLASKLIAPEDANMMQSAETMVFGKTQKGGPAAAMQAAATFNERAGLVGHHQATDAASNEGVSVTETDIPGA RIITESVGGQVLGQFVQRTPVLGVDVDVDVVVQDKITIGEALEATGRTSGDKPVDQSDASAIQAAEARATGSSVTVPGGLAAAAQSAATYNAGLDRDEAK IKLRDVLRDVAGKLSADKVVTREDAEGVASAEMRNNANVSTNPAGVAASMISAARLNQDVAGAP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22490			Seed maturation protein (.1)		Lus10006121 [exp]	0	1
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	20.9	0.8292
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10024605 [exp]	43.0	0.7701
					Lus10006993 [exp]	46.3	0.7844
					Lus10016946 [exp]	53.3	0.7418
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10002435 [exp]	56.3	0.7815
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	66.1	0.7858
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030656 [exp]	82.0	0.7680
					Lus10000578 [exp]	96.1	0.7675
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029318 [exp]	101.0	0.7612
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10014274 [exp]	103.2	0.7690

Compare expression of checked genes

Lus10006121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.