Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32090 199 / 4e-67 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT2G28420 64 / 1e-13 GLYI8 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) AT1G80160 50 / 2e-08 GLYI7 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT1G15380 49 / 5e-08 GLYI4 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010552 [exp] 282 / 9e-100 AT2G32090 197 / 3e-66 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10039579 [exp] 58 / 6e-11 AT2G28420 248 / 2e-84 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10005324 [exp] 55 / 8e-10 AT2G28420 245 / 2e-83 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10030070 [exp] 47 / 7e-07 AT1G80160 247 / 7e-85 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10014480 [exp] 46 / 8e-07 AT1G80160 244 / 1e-83 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10025971 [exp] 44 / 5e-06 AT1G15380 165 / 3e-52 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10014269 [exp] 44 / 1e-05 AT1G15380 166 / 2e-52 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087000 [exp] 217 / 5e-74 AT2G32090 189 / 3e-63 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.008G153602 [exp] 156 / 2e-49 AT2G32090 139 / 8e-43 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.009G055500 [exp] 59 / 1e-11 AT2G28420 229 / 1e-77 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Potri.001G171600 [exp] 52 / 6e-09 AT1G80160 270 / 6e-94 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G009000 [exp] 51 / 2e-08 AT1G80160 190 / 8e-62 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G062400 [exp] 50 / 4e-08 AT1G80160 261 / 2e-90 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.004G223300 [exp] 50 / 4e-08 AT1G80160 187 / 1e-60 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.007G015100 [exp] 47 / 7e-07 AT1G15380 167 / 7e-53 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.005G117000 [exp] 45 / 3e-06 AT1G80160 166 / 2e-52 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.007G129200 [exp] 41 / 4e-05 AT1G80160 225 / 1e-76 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10006122 pacid=23174766 polypeptide=Lus10006122 locus=Lus10006122.g ID=Lus10006122.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCCTCGGCACCTATTCTCAGCCACATCGCCAGAGAATCCACAGACATTAGACGCCTGGCCAATTTCTACAAGGAGATCTTTGGGTTTGAGG AGATCGAGACTCCCGATTTTGGATTCAACGTGATATGGCTGAATCTGGCGAATGCTTTCTCTTTCCACCTCATTGAGAGGAGCCCCGAGACCAAGCTTCC AGAAGGACCTTACAGTGCTTCAGAGCCGATTCGCGATGTCACCCATCTCGCCAGAGGCCATCATATCTGTATCTCCGTCGCCAACTTCGACGCTTTTGTT CAATCTCTAAAGGAGAAAGGGATAGAGACGTTCCAGAGGGCAGTTCCTGGTCGGTCAATTAGGCAAGTTTTCTTCTTTGATCCAGATGGCAATGGACTGG AGGTGGCAAGTCGGGATGAGTAG
AA sequence Show only first row Show all	>Lus10006122 pacid=23174766 polypeptide=Lus10006122 locus=Lus10006122.g ID=Lus10006122.BGIv1.0 annot-version=v1.0 MAAASAPILSHIARESTDIRRLANFYKEIFGFEEIETPDFGFNVIWLNLANAFSFHLIERSPETKLPEGPYSASEPIRDVTHLARGHHICISVANFDAFV QSLKEKGIETFQRAVPGRSIRQVFFFDPDGNGLEVASRDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32090			Lactoylglutathione lyase / gly...		Lus10006122 [exp]	0	1
AT4G10330			glycine-rich protein (.1)		Lus10001357 [exp]	1.4	0.9609
AT1G58030		CAT2	cationic amino acid transporte...		Lus10001334 [exp]	5.1	0.9586
AT4G27130			Translation initiation factor ...		Lus10027181 [exp]	5.5	0.9516
AT5G44250			Protein of unknown function DU...		Lus10042660 [exp]	5.7	0.9573
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	6.2	0.9404
AT4G27130			Translation initiation factor ...		Lus10015124 [exp]	6.7	0.9436
AT3G07580			unknown protein		Lus10016076 [exp]	7.4	0.9517
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	9.6	0.9317
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	10.4	0.9519
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	13.0	0.9292

Compare expression of checked genes

Lus10006122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.