Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14850 924 / 0 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 523 / 4e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 498 / 2e-166 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 491 / 2e-165 MEF22 mitochondrial editing factor 22 (.1) AT4G33170 500 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 489 / 1e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G13230 481 / 5e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 472 / 2e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 471 / 4e-157 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 474 / 1e-156 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010551 [exp] 1021 / 0 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 511 / 1e-171 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 511 / 6e-170 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 509 / 1e-167 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 493 / 3e-166 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 501 / 8e-166 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 490 / 3e-165 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 505 / 5e-164 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 505 / 5e-164 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086900 [exp] 1065 / 0 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 528 / 3e-179 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 530 / 3e-177 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 506 / 1e-172 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129100 [exp] 521 / 3e-172 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 511 / 1e-171 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 511 / 2e-171 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 501 / 6e-169 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 510 / 4e-168 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 493 / 1e-166 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006123 pacid=23174772 polypeptide=Lus10006123 locus=Lus10006123.g ID=Lus10006123.BGIv1.0 annot-version=v1.0 ATGGCCGTCTTCAGCCCCAATGCGCTCGCGTCGCTTCTCGAATCCGCCGTCTCAACTCGCCGCCCCCTTCTCGGCAGAGTCACTCATGCCCAAATCATCA AGACTCTTTTTCTTCTTCCTTCCTACCACCTCCCTCCTTTCCTCTCCAACCATCTCGTCAGCATGTACTCCAAATTCGGCCTTCCTGGTCCCGCCGAGCT CGTTCTCCAGCTAGCTCCTTCCCGCTCCGTTGTCACCTGGACTTCTCTCATCTCCGGAAGCGTCCAGAACGGACACTTCTCGTCCGCCCTCCGTCACTTC TCTAACATGCGCCGCGACGACATTCTCCCCAATGATTTCACCCTTCCCTGCGCCTTCAAGGCGTCCGCTTTCCTCAAGCTTCGCTTCGTAGGACGTCAAG TTCATGCCTTGTCGGTAAAGATAGGGCAGATTTCCGATGTCTTTGTTGGCTCCGGTGCGTTTGATATGTATTCCAAGACTGGGTTGATAGCCGATGCCGA GAAACTGTTCGATGAAATGCCTGAACGAAATATTGTCACGTGGAATGCGTTTATTTCTAACGCTGTGCTGGACGGGAGGCCCAAGGCTGCGATCCAAGCG TTTATTGACTTTGTTCGGGTGGGTGGAGAGCCAGATGGGATAACCTTCTGCGCCTTTCTGAATGCATGTGCTGATACGTTGAACTTGGTGTTGGGGAAAC AATTACATGGATTGGTGATGCGTAGTGGGTTTGAGAGGGATGTTTCCGTTTCTAATGGCCTTATTGATTTTTATGGCAAGTGTAAGGAGGTTCGATTGGC TGAGATGGTTTTTGATGGAATGGAGAGGAGAAATTTGGTTTCGTGGTGTTCAATGGTAGCTACATACGAACAGAATGGTGAAAAGGAGAAAGCCTGTATG GTTTTTACGGAATGCAGGAGATTAGGGGTTGAGCCAACTGATTACCTGATTTCAAGTGTGGTCAGTGCTTGTGCTGAACTCGCTGCGCTTGAATTGGGAA GGTCAGTTCATGCACTTACTGTCAAATCATGTGTGGACGCTGATGTTTACGTTGGCAGTGCCCTCGTAGACATGTATGGAAAATGCGGAAGCATACGTGA TGCTGAGCAGACCTTTCACGAGATGCCTGAGAAGAACTTGTTTGCTTGGAATGCAATGATCAGTGGGTATGCACACCAAGGACATGCTAATATGGCAATC GGATTGTTCAGAGAGATGCCATCTGTGGTTGCTCCGAATTATGTGACATTCGTCTGTGTCTTATCAGCTTGCAGTAGAGGAGGGGCAGTCGAGACAGGCA TGAACGTTTATGAGTCGATGAGGAATGAATATGGAATTGTACCAGGACCAGAGCATTATGCTTGTGTTGTGGACATGTTGGCTCGATCCGGATTAGTAGA GCGGGCCTATGATTTTGTGCAAAAACTGCCAATTAGACCAACAATTTCCATCTGGGGAGCTCTTTTAAATGCTTGTAGGGTGCATGGGAAGCTGGAGATA GGGAAAACTGCTGCTGATAACCTATTTGAACTCGATCCAAAAGATTCCGGCAATCATGTACTGCTGTCAAATATGTTTGCTGTTGCTGGCAGGTGGGAAG AAGCTACTCTTGTGAGAAAAGAAATGAACAACGTTGGAATCAAGAAAGGTGCAGGCTGTAGTTGGGTTACAGCACAAAACAGAGTCCACGTCTTCCAAGC TAAAGATACATTCCATGAGAGAAATTCCGAGATTCAGGAAATGTTAACTAGGCTAAAGAAAGAAACGGAAGCTGCAGGCTACATCACAGATACTAACTAC GCGCTGTTTGATTTAGAAGAAGAAGAGAAAAAAACAGAAGTTTGGCATCACAGCGAGAAAATTGCTCTGGCATTCGGTCTCATCGCCATCCCACCTGGAG TACCAATTAGGATAACGAAGAACCTCAGGATATGTGGGGATTGCCACAGTGCCTTCAAACTCATATCGGCCATTGTTCACAGAGAAATTTTGGTCAGAGA TAATAATAGGTTCCATTATTTCCGGGATGGCCAATGCTCCTGTAAAGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10006123 pacid=23174772 polypeptide=Lus10006123 locus=Lus10006123.g ID=Lus10006123.BGIv1.0 annot-version=v1.0 MAVFSPNALASLLESAVSTRRPLLGRVTHAQIIKTLFLLPSYHLPPFLSNHLVSMYSKFGLPGPAELVLQLAPSRSVVTWTSLISGSVQNGHFSSALRHF SNMRRDDILPNDFTLPCAFKASAFLKLRFVGRQVHALSVKIGQISDVFVGSGAFDMYSKTGLIADAEKLFDEMPERNIVTWNAFISNAVLDGRPKAAIQA FIDFVRVGGEPDGITFCAFLNACADTLNLVLGKQLHGLVMRSGFERDVSVSNGLIDFYGKCKEVRLAEMVFDGMERRNLVSWCSMVATYEQNGEKEKACM VFTECRRLGVEPTDYLISSVVSACAELAALELGRSVHALTVKSCVDADVYVGSALVDMYGKCGSIRDAEQTFHEMPEKNLFAWNAMISGYAHQGHANMAI GLFREMPSVVAPNYVTFVCVLSACSRGGAVETGMNVYESMRNEYGIVPGPEHYACVVDMLARSGLVERAYDFVQKLPIRPTISIWGALLNACRVHGKLEI GKTAADNLFELDPKDSGNHVLLSNMFAVAGRWEEATLVRKEMNNVGIKKGAGCSWVTAQNRVHVFQAKDTFHERNSEIQEMLTRLKKETEAAGYITDTNY ALFDLEEEEKKTEVWHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKLISAIVHREILVRDNNRFHYFRDGQCSCKDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10006123 [exp]	0	1
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	1.7	0.8531
AT4G18840			Pentatricopeptide repeat (PPR-...		Lus10010902 [exp]	4.0	0.7933
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004002 [exp]	5.9	0.7997
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10025556 [exp]	8.8	0.8177
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	12.5	0.8069
AT5G48120			ARM repeat superfamily protein...		Lus10037557 [exp]	14.5	0.7780
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	15.0	0.8060
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Lus10012118 [exp]	19.9	0.7730
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	20.1	0.7597
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	25.2	0.7802

Compare expression of checked genes

Lus10006123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.