Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22520 238 / 3e-68 unknown protein AT4G14840 229 / 3e-65 unknown protein AT1G05410 115 / 5e-27 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G22510 89 / 8e-21 Pre-rRNA-processing protein TSR2, conserved region (.1) AT5G27990 60 / 6e-10 Pre-rRNA-processing protein TSR2, conserved region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010551 [exp] 900 / 0 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041202 [exp] 566 / 0 AT3G22520 327 / 1e-104 unknown protein Lus10000233 [exp] 316 / 4e-102 AT3G22520 215 / 1e-66 unknown protein Lus10021916 [exp] 189 / 7e-56 AT3G22520 129 / 5e-36 unknown protein Lus10021915 [exp] 100 / 9e-22 AT1G05410 390 / 7e-132 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10011922 [exp] 90 / 4e-21 ND / Lus10041201 [exp] 97 / 1e-20 AT1G05410 325 / 4e-107 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10034915 [exp] 79 / 2e-17 AT1G49340 60 / 1e-11 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10010550 [exp] 82 / 8e-16 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086700 [exp] 393 / 1e-126 AT3G22520 320 / 5e-102 unknown protein Potri.008G153800 [exp] 295 / 3e-89 AT4G14840 329 / 7e-106 unknown protein Potri.010G086800 [exp] 119 / 2e-31 AT3G22510 98 / 2e-27 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.010G086600 [exp] 118 / 1e-27 AT1G05410 442 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.013G035000 [exp] 79 / 3e-16 AT5G27990 126 / 1e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.005G047901 [exp] 76 / 4e-15 AT5G27990 124 / 7e-36 Pre-rRNA-processing protein TSR2, conserved region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10273 [flax] [poplar] WGG Pre-rRNA-processing protein TSR2
Representative CDS sequence Show only first row Show all	>Lus10006124 pacid=23174760 polypeptide=Lus10006124 locus=Lus10006124.g ID=Lus10006124.BGIv1.0 annot-version=v1.0 ATGGAACCCATGATCGGAAGCAACTATGTATCTCCACCACTAATCCAAGACTCCAATTCGACCGAATATTCGATCCGTCATCTACAGCTAGGCATCGGAT TCCTCCTATCTCGATGGAACGCTCTGCAAATGGCTGTTGAGAAGCAATGGGGCGGCCATGATTCTTTGCAGAAATCCCACCAGCTATCCCACGATGTCTT CTCTTGGTTCTTCCATTCCAAGGGGCGACTGAATGTGGAGGATTTGGAGAATTTGCTTCATGAAACTCTGCTTCTGGATTTCAACACCGAGGTTGAAGAT GGCAGCATTGAGAAGGTAGCAGAACAGCTGATGGTGATGCGCTATGGTCCACCATCTCCGCAGCAGAATGATCAAATTGTGGGGAATGGGATCCAAAATG GTGGTAATCCGTTTGTTGAGAATGGTTCGCCTCAAGATAAGAAGCTGTTGAATGATGTTATTAATAATGTAATTAGTGAGCTGAACAGTGGCGATGTTAT CAACGAGGAAGTGAATAAAGAGCATGGGACTGGCCAGGGTGGCGAGTCCGGTGAGCTTAGGAATATCCATCCTGGTGACACTGGTGAAGGGTTACCGTAT GCTCCTGTGGATTGGCCTAACCCAGGTGACAACTGGACCTGGAAGGTAGGGAGGAGGATTAACGCTGTTGGGTTCTTCCAAGATAGGTTTTTGTATCCAC CAAAACATTTCCCCAAAGTGACAGGTCTGAGAGCTCCGTTTGCAAGCAGGACTGCTGTTACCAACTATATCCGCACGGTCTTTCCAGATTCGAATGTTGA TGCATTTTTTTCATCCTTCTCTTGGAAGGTCCCTGGAAAGCCGCTGACACCGGCAACAGTGGAACTCGTCTCTATCACTTCCCCAAAGCCTTCAGACGAT GCAAACAAGGAAGTCGAAGGGCAAGGAGAAGTCTCTCGTCTGAGAAAAAGGAAGCCAATATCACCACCTCCACCACCATCACCACCTCCTCCTAAGAAGA AGAAAACACGGAATGCTGCAAAACCATCATCTGCACCATCTAAGCAGAAATCAAACCAGAATTCAAACCAGAAAAATGTAGCTGCATCATCATCTGCAGC AAAGCGAAAAACTCGGCATGGTGCTAAACAAACTTTTCCGGTTCCTTTTGCTGATGAGAAGGATGGACAGGCTGAGGAGGAAATGTTCAATATTTCCATA CCAGAGGACTTCGACAACTATCTCAACTCTTTAGAAGACATCATCGCTCAGCCACTATCTGGTTCCATGTCTGTTCAGCAGCCTACAACTAGGGAGTCTC CTTTAGCTGATGAGGAGATAGCTGAAGCTAGGCACAGGCTTTCTTCCTTGCTTGTTATGGACTTCCCTTCACTCGTTTTGTCGAAAAACTACGTCGAACT TCCAGGACTAGCTGCTAAACTTCGCAAGGATCCACATCTGACTGCTGAACAGCTTGTGAAACTGAAGCTGATCGAGGAAATTCCATCGTTCAGGGAAGTG TTTCTGGAGAGTAGGGATATCATAGACCAGATTGACAGACAGTTTGGGACCCTTGATGCTAACAAGGCAAAGGTTGCTTCTCTCAAGAGTGAGTATAGCG AGCTCAAGTACAAAACTGACGAACTTCAGGCACAAATAGATAGTAACTTGGCAGCCATTGAAGAAATCAACAATGAAATTGCGAGGCTCCAGGCACGAAA AGCAGAGCTGATTAAGGCAGCCGAATCAAACAAAGCAGCTAAGCTGGAGGTGAGCTATGCACAGAAGATGGTGGCGAATGCGATCCCGAATGTGGTCCGT GAGATTCAAAATTCAAACTCCGAGGCTCCAGAGTGGGATGTGAAAAGGAGCAATGCAGTGAAGAGGGAGGAAGAAATACTGGCTAAGTTTGCACCTTTGC AAGGATTCTCACTGGTTCCATCACCCTTCCAGGTTATAATCGTCCAATCTGCCTACCATGGGCTTCGCCAGTGGCAAGGACCCGAGAACCACGAAGTTCC TTCACATCAACTTTGGAATATCATTTGGAAAAGCAACCTTCCCCTCATAGCTGATTCTTCTTGTGGAGATGCACAACTGATAGTCTGGCAACCAACCTCA ACCTCTTCATCTGCCACTGCCACTACGGTCCGTGACCAACATGCCTCGTTTGCCATTCTGAATCGGAGACCCTCCTTCACTGACTGGCCCACTGCCCGGC TGCGACTAGGGTTTGGAACACCTCCCCCCTTCCACGTAGAAACAAGCCCATTCACGCCCAAAGCTCCCATCTTTGGTGTCTGGCCCTCCTGCCAAGCCAC CCCGAGGATGCAATACACGGTGTTTGAGAATAAGCGGGAGTGGAAACGGACTGATTTAGAGCAGTTGGAGAGGAACACGGCATGTTCCGGGTGTGAAAAA GGGCGAAAAACTTACAGGGGAGGAACACGGCATAGAGCACGGCGTGTCCCAAGGCATGCTTCGTGGAACACGGCGTGTTCCATATTGAACACGCCGTGTC CTGATGATGAAAAATGGGCGAAAAGTTACAGGGGCCGAACACGGCCAGGCGCACGGCGTGTCCCAAGGCGTGTTCTGCGGAACACGGCGTGTCCCAAGGC GTGTTCCACATGGAACACGACGTGTTCCATCCCAGACGGATTTTTAATCCTTTTCCATCTCGGATTGGGACGAGGAGCCTATAAAAAACCCTAG
AA sequence Show only first row Show all	>Lus10006124 pacid=23174760 polypeptide=Lus10006124 locus=Lus10006124.g ID=Lus10006124.BGIv1.0 annot-version=v1.0 MEPMIGSNYVSPPLIQDSNSTEYSIRHLQLGIGFLLSRWNALQMAVEKQWGGHDSLQKSHQLSHDVFSWFFHSKGRLNVEDLENLLHETLLLDFNTEVED GSIEKVAEQLMVMRYGPPSPQQNDQIVGNGIQNGGNPFVENGSPQDKKLLNDVINNVISELNSGDVINEEVNKEHGTGQGGESGELRNIHPGDTGEGLPY APVDWPNPGDNWTWKVGRRINAVGFFQDRFLYPPKHFPKVTGLRAPFASRTAVTNYIRTVFPDSNVDAFFSSFSWKVPGKPLTPATVELVSITSPKPSDD ANKEVEGQGEVSRLRKRKPISPPPPPSPPPPKKKKTRNAAKPSSAPSKQKSNQNSNQKNVAASSSAAKRKTRHGAKQTFPVPFADEKDGQAEEEMFNISI PEDFDNYLNSLEDIIAQPLSGSMSVQQPTTRESPLADEEIAEARHRLSSLLVMDFPSLVLSKNYVELPGLAAKLRKDPHLTAEQLVKLKLIEEIPSFREV FLESRDIIDQIDRQFGTLDANKAKVASLKSEYSELKYKTDELQAQIDSNLAAIEEINNEIARLQARKAELIKAAESNKAAKLEVSYAQKMVANAIPNVVR EIQNSNSEAPEWDVKRSNAVKREEEILAKFAPLQGFSLVPSPFQVIIVQSAYHGLRQWQGPENHEVPSHQLWNIIWKSNLPLIADSSCGDAQLIVWQPTS TSSSATATTVRDQHASFAILNRRPSFTDWPTARLRLGFGTPPPFHVETSPFTPKAPIFGVWPSCQATPRMQYTVFENKREWKRTDLEQLERNTACSGCEK GRKTYRGGTRHRARRVPRHASWNTACSILNTPCPDDEKWAKSYRGRTRPGARRVPRRVLRNTACPKACSTWNTTCSIPDGFLILFHLGLGRGAYKKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22520			unknown protein		Lus10006124 [exp]	0	1
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	2.2	0.8484
AT3G51650			unknown protein		Lus10009100 [exp]	4.9	0.8168
AT1G17820			Putative integral membrane pro...		Lus10038326 [exp]	6.0	0.7924
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	6.2	0.8225
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	6.5	0.8200
AT4G21060			Galactosyltransferase family p...		Lus10036154 [exp]	6.6	0.8222
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	7.3	0.8335
AT1G27170			transmembrane receptors;ATP bi...		Lus10004905 [exp]	7.7	0.8221
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	11.4	0.7992
AT4G24500			hydroxyproline-rich glycoprote...		Lus10020639 [exp]	13.0	0.7949

Compare expression of checked genes

Lus10006124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.