Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54140 521 / 3e-180 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 519 / 2e-179 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 487 / 1e-166 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 483 / 4e-165 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 429 / 1e-144 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G68570 404 / 3e-134 Major facilitator superfamily protein (.1) AT2G26690 400 / 7e-133 Major facilitator superfamily protein (.1) AT3G54450 397 / 3e-132 Major facilitator superfamily protein (.1) AT3G21670 386 / 2e-127 Major facilitator superfamily protein (.1) AT5G46040 380 / 4e-125 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024300 [exp] 1085 / 0 AT3G54140 532 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10035516 [exp] 521 / 3e-180 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10018207 [exp] 513 / 1e-174 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10011055 [exp] 504 / 1e-173 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 496 / 2e-170 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 494 / 1e-169 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 492 / 9e-169 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10021132 [exp] 484 / 7e-166 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040698 [exp] 462 / 8e-158 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G029200 [exp] 860 / 0 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.005G233500 [exp] 854 / 0 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 524 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 514 / 8e-178 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 512 / 8e-177 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 510 / 5e-176 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 505 / 5e-174 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 485 / 6e-166 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 469 / 1e-159 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.006G092000 [exp] 419 / 2e-140 AT2G37900 777 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10006125 pacid=23148017 polypeptide=Lus10006125 locus=Lus10006125.g ID=Lus10006125.BGIv1.0 annot-version=v1.0 ATGACCAATCTAGTACAAAATGGCTGCTTTGATTTTCGAGGAAGAGTTGCGGATAAGCAATTCACTGGAGGATGGAAAAGTGCTCCGTTCATTATAGTGA ATGAAGTAGCAGAGAGGCTTGCGTTTTTCGCCATCGCCGTGAACATGGTGGCCTACTTGGTGCTAGAGATGCGCCACACGCTTCCCACGGCTGTAACACA CGTCACTAACTGGATTGGAGCTGCCTACGTCCTCACTCTCCTCGGAGCTTTCCTCGCCGACGCATATCTTGGCCGATTTCGTACCATCATGATTTTCTCC TGCGTTTACTCAGTTGGAATGGTGATGTTAACCTTGTCCGCCTCCGTTGACGACCTCCGACCACAGCCCTGCAAAGTAGTCAAACCGTGCCCGAAGGCGA CTGAGGGACAAACAGCGTTCCTATACTGTGCCCTGGCCTTGATCGCGCTCGGAACTGGAGGAATAAAACCATGCGTATCGTCGTTCGGTGCAGACCAATT CGACGAGTCGGATCCAAGAGAGGAGACGAAGAAATACGCCTTCTTCAATTGGTTCTTCTTTGCAATTAACATGGGCGCTCTGTTAGGAATCACGCTGATG GTGTATCTCCAGATTAAGGAAGGTTGGGTTTGGGGTTTCGGAGTTCCCACTGCCGCCATGTTGCTATCCGTCGTGATTCTCGCCGCCGGGTTCCGATTTT ACAGGTTCCAGAAGCCGATGGGGAGCCCTTTCACTAGGTTCGTTCAGGTGTTGGTTGCTTCGGTTAGGAATCACAGTGAAGGCGTGGAGGTGGATGACAA ACACCAACTGTTCGAAGTAATGACTCAAACGTCTGACATCTTTGGCGCCCGTAAACTTTCCCACACCGCACAGTACCGGTTCTTGGACAAGGCAGCAATT GTGACGGATACAGGGGTGGACTTAACGAATCGCTGGAAACTATGTACAATAACCCAAGTGGAAGAATTGAAGTCATTTATCAGAGTGCTTCCTGTATGGG CATCAACAATTGCTCTCTCCATCTCCTTCGCTCAGATGTCAACCTTCTTTGTTAGCCAAGCTGCTCTAATGCACCGAAAACTCGGAGGCAGGTCCAACTT CGAGATCCCAGCTGGATCTGTTCCAGTCTTTGCTGCCATCAACGCATTGTTCCTTGTCCCCGTATACGAGAAACTGATAGTCCCGAGTCTCCGCAAGAGA ACAGGACATCCTAGGGGGATTACGTCTCTCAATAGAATGGGAGTAGGACTGTTTGTTTCTATATTCGCAACTCTCGCAGCCGCAATAGTGGAGAAGCGAC GTAGGGACAACCCAAACAGAGCAGACATGACTGTGTTCTGGCTGTTCCCTCAATTCTTTCTAGTAGGGACTGCAGAGGTGTTCACCTACGTGGGGCAGTT GGAGTTCTTTTACGATGAGGCCACAGACGGGACGAGGAGTATTAGCAGTGCCATGTTCCTGGCAGAGATAGGGATAGGGAGCTGGCTTAGCACGGCGTTA GTGAAGATCATTGGGGCTGTGACGGGTGGAGAAGATAGGGGATGGTTGAGGAATAAGTTGAACGATAGCAAGTTGGATTACTTTTACTGGGTGTTGACGG TGATAAATGGGGTGAATTTCATGGTTTACGTGGTGGTTGCTTTGCGTTATAAGGGCAGAGTATCGGTTGCAAGTGTGAGGGATGAGGTCGAGCAAGTCCA AGGGAGGATGAATATGGTTGGTGATAAGGACCTTAAAAGCGTTGCACTCTGA
AA sequence Show only first row Show all	>Lus10006125 pacid=23148017 polypeptide=Lus10006125 locus=Lus10006125.g ID=Lus10006125.BGIv1.0 annot-version=v1.0 MTNLVQNGCFDFRGRVADKQFTGGWKSAPFIIVNEVAERLAFFAIAVNMVAYLVLEMRHTLPTAVTHVTNWIGAAYVLTLLGAFLADAYLGRFRTIMIFS CVYSVGMVMLTLSASVDDLRPQPCKVVKPCPKATEGQTAFLYCALALIALGTGGIKPCVSSFGADQFDESDPREETKKYAFFNWFFFAINMGALLGITLM VYLQIKEGWVWGFGVPTAAMLLSVVILAAGFRFYRFQKPMGSPFTRFVQVLVASVRNHSEGVEVDDKHQLFEVMTQTSDIFGARKLSHTAQYRFLDKAAI VTDTGVDLTNRWKLCTITQVEELKSFIRVLPVWASTIALSISFAQMSTFFVSQAALMHRKLGGRSNFEIPAGSVPVFAAINALFLVPVYEKLIVPSLRKR TGHPRGITSLNRMGVGLFVSIFATLAAAIVEKRRRDNPNRADMTVFWLFPQFFLVGTAEVFTYVGQLEFFYDEATDGTRSISSAMFLAEIGIGSWLSTAL VKIIGAVTGGEDRGWLRNKLNDSKLDYFYWVLTVINGVNFMVYVVVALRYKGRVSVASVRDEVEQVQGRMNMVGDKDLKSVAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10006125 [exp]	0	1
AT4G13230			Late embryogenesis abundant pr...		Lus10038156 [exp]	14.9	0.6878
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10018173 [exp]	48.3	0.5512
					Lus10009363 [exp]	52.2	0.5964
AT5G19640			Major facilitator superfamily ...		Lus10013736 [exp]	73.9	0.5778
AT5G42905			Polynucleotidyl transferase, r...		Lus10006008 [exp]	102.9	0.5935
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018098 [exp]	127.8	0.5678
AT1G80930			MIF4G domain-containing protei...		Lus10011226 [exp]	158.4	0.5565
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Lus10011710 [exp]	162.9	0.5671
					Lus10019938 [exp]	178.1	0.5638

Compare expression of checked genes

Lus10006125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.