Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27190 676 / 0 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT2G16430 653 / 0 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT1G56360 560 / 0 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 554 / 0 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT5G34850 527 / 0 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT1G52940 483 / 1e-169 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT2G18130 479 / 8e-168 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT3G46120 372 / 2e-126 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT3G52820 268 / 3e-85 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G20500 267 / 9e-85 ATPAP18, PAP18 purple acid phosphatase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024299 [exp] 813 / 0 AT2G27190 612 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10028799 [exp] 662 / 0 AT2G16430 746 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017484 [exp] 661 / 0 AT2G16430 748 / 0.0 purple acid phosphatase 10 (.1.2) Lus10041959 [exp] 658 / 0 AT2G16430 731 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028798 [exp] 617 / 0 AT2G16430 673 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017485 [exp] 599 / 0 AT2G16430 671 / 0.0 purple acid phosphatase 10 (.1.2) Lus10039978 [exp] 533 / 0 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10027710 [exp] 528 / 0 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10008054 [exp] 521 / 0 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233400 [exp] 748 / 0 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 716 / 0 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 704 / 0 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.009G121200 [exp] 684 / 0 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.006G063700 [exp] 536 / 0 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 527 / 0 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 519 / 0 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.011G138200 [exp] 278 / 7e-89 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 275 / 5e-88 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 252 / 7e-79 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10006126 pacid=23148024 polypeptide=Lus10006126 locus=Lus10006126.g ID=Lus10006126.BGIv1.0 annot-version=v1.0 ATGGGGAGGAAGTGGGTTAATGTGGTGGGCTTAGTTGCATTAGTAGTGGTGTTGTGTCTGACCGAGATCAGCAATGGTGGGACGACGAGCAGTTTTGTTA GGAACGCCGATTTGGTTCATGATATGCCGCTAGACAGCGATGTATTTAAAGTACCTCCTGGCTACAATGCTCCTCAGCAGGTTCACATTACACAAGGAGA CCATGAAGGGAGGGGGATTTTGGTATCCTGGATAACTCAGGATGAGCCTGGTTCAAATACAGTGCAGTACTGGGCTGAAGGAAGCAAGCAGAAAAGTCAT ACTCAAGGGATTCTGGTGAAGTACAAGTATATCAATTATACCTCTGGATACATTCATCACTGTACCATTAACAACTTGGAGTTTGACACCAAGTATTACT ATGAGGTGGGAATTGGTGGAAACTCGACAAGGCAATTCTTTTTTACAACCCCACCAAAACCTGGCCCTGATGTGCCTTATACTTTTGGTCTCATAGGGGA TCTTGGTCAAACTCCTGATTCAAACAGGACAATCGATCATTATCTATCCAATCCGAGGAAACCAAAGACATTGCTGTTTGTTGGTGACCTGTCTTATGCA GATGCTTATCCGTTACATGATAACACGAGGTGGGATACATGGGGAAGGTTCAGTGAAAGATTGGTTGCTTATCAACCTGCTATCTGGACAGCAGGAAATC ATGAAATAGATTTTCTCCCTAATAATGGTGAAACTAAGCCCTTCCAACCTTATTTACACCGTTACCATGTCCCGTTTAAAGCATCAGGAAGTACATCTCC ACTGTGGTACTCCGTTAAAAGGGCTTCAGCATACATTATCGTCCTCTCCAGCTACTCTGCTTTTGGAATGTACACTCCTCAATACAAGTGGCTAGTAGAG GAGCTGCCTAAAGTTAACAGGAGGGAGACACCATGGCTGATAGTGATAATGCATTCTCCGTTGTACAGTAGCTACGAGCACCATTATATGGAAGGTGAAA CCATGCGAGTGATGTTCGAGCAATGGTTTGTAAAATACAAGGTTGATGCTGTCTTTGCCGGACATGTTCATGCTTATGAACGATCTGAACGCATATCGAA CATTGCATACAACATAGAAAACGGGTTGTGCACTCCAGTGAAGGATGAATCGGCTCCAGTTTACATTACTATTGGAGATGGAGGAAATCTTGAAGGACTG CTGACAGATATGATAGAACCACAACCCAACTACTCAGCTTTCAGAGAACCGAGCTTTGGTCATGGAGTTCTGGACATAAAGAACAGGACACATGCGTATT TTGGGTGGCATCGGAATCAGGATGGATATGCCGTTGAAGCTGATTCCTTGTTATTACTCAACAGGCACTGGAAGAACCCCTTGGCCGCCATTTAA
AA sequence Show only first row Show all	>Lus10006126 pacid=23148024 polypeptide=Lus10006126 locus=Lus10006126.g ID=Lus10006126.BGIv1.0 annot-version=v1.0 MGRKWVNVVGLVALVVVLCLTEISNGGTTSSFVRNADLVHDMPLDSDVFKVPPGYNAPQQVHITQGDHEGRGILVSWITQDEPGSNTVQYWAEGSKQKSH TQGILVKYKYINYTSGYIHHCTINNLEFDTKYYYEVGIGGNSTRQFFFTTPPKPGPDVPYTFGLIGDLGQTPDSNRTIDHYLSNPRKPKTLLFVGDLSYA DAYPLHDNTRWDTWGRFSERLVAYQPAIWTAGNHEIDFLPNNGETKPFQPYLHRYHVPFKASGSTSPLWYSVKRASAYIIVLSSYSAFGMYTPQYKWLVE ELPKVNRRETPWLIVIMHSPLYSSYEHHYMEGETMRVMFEQWFVKYKVDAVFAGHVHAYERSERISNIAYNIENGLCTPVKDESAPVYITIGDGGNLEGL LTDMIEPQPNYSAFREPSFGHGVLDIKNRTHAYFGWHRNQDGYAVEADSLLLLNRHWKNPLAAI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27190		ATPAP12	ARABIDOPSIS THALIANA PURPLE AC...		Lus10006126 [exp]	0	1
AT3G19330			Protein of unknown function (D...		Lus10035125 [exp]	5.9	0.7648
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	7.9	0.7726
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Lus10011396 [exp]	8.5	0.7588
AT4G38690			PLC-like phosphodiesterases su...		Lus10025062 [exp]	19.0	0.7498
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10031084 [exp]	19.7	0.7388
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	23.9	0.7402
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10040265 [exp]	45.7	0.7542
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	71.3	0.7255
AT4G13450			Adenine nucleotide alpha hydro...		Lus10032598 [exp]	91.9	0.7232
AT5G50460			secE/sec61-gamma protein trans...		Lus10035206 [exp]	101.0	0.6940

Compare expression of checked genes

Lus10006126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.