Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18570 63 / 4e-12 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024297 [exp] 240 / 2e-78 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10034166 [exp] 71 / 1e-14 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 70 / 2e-14 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G029600 [exp] 192 / 7e-60 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.010G022400 [exp] 69 / 2e-14 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006128 pacid=23148023 polypeptide=Lus10006128 locus=Lus10006128.g ID=Lus10006128.BGIv1.0 annot-version=v1.0 ATGCCAAACCTTGGCCGTCTGGACGGGGATCCAGCTTTGGGACCTGAGATGTATTCATCTGCAGCAACATTGGCAGATCTTCCTGGTCTTATAGAAGGTG CTCATCTGGGCAAGATGCAGCTGCAGGAACCTGTGAATGATTACAGAACTGTCAGAGAAGAGTTGAGAATGTACAATCCCGAGTACCTTCAAAGGCCATA CCTCGTAGTGCTCAACAAGATCGATCTTCCTCAGATTTATGAGAGGCTTCAATCCTTGAGTGAAGAAATATCAACAATAGGTACTGATAACTTGAATCCT CATGCTTCTGATAAAGAAGATAAAGAGGACAAACAGATACAGGACTATGCTCGACGCTTTGCTGTTGTAGGAGTTAGTGTTTTGAAAGGGATCAGAGTAA ATGAGATGTTGAAACAGATTCGAGCTGCCTTACGAAAGTGCAGAGAATCTGTATGA
AA sequence Show only first row Show all	>Lus10006128 pacid=23148023 polypeptide=Lus10006128 locus=Lus10006128.g ID=Lus10006128.BGIv1.0 annot-version=v1.0 MPNLGRLDGDPALGPEMYSSAATLADLPGLIEGAHLGKMQLQEPVNDYRTVREELRMYNPEYLQRPYLVVLNKIDLPQIYERLQSLSEEISTIGTDNLNP HASDKEDKEDKQIQDYARRFAVVGVSVLKGIRVNEMLKQIRAALRKCRESV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	0	1
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	1.4	0.9088
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10017011 [exp]	1.7	0.8817
					Lus10039070 [exp]	2.0	0.8814
AT2G46090			Diacylglycerol kinase family p...		Lus10036388 [exp]	2.0	0.8981
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10005480 [exp]	2.4	0.8637
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	3.7	0.8635
AT1G35340			ATP-dependent protease La (LON...		Lus10008251 [exp]	4.5	0.8721
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034418 [exp]	5.1	0.8398
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032659 [exp]	5.2	0.8565
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	6.9	0.8617

Compare expression of checked genes

Lus10006128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.