Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024297 [exp] 417 / 1e-144 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 42 / 0.0004 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G029600 [exp] 282 / 1e-91 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.005G233101 [exp] 116 / 3e-32 ND / Potri.001G239600 [exp] 42 / 0.0005 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01018 [flax] [poplar] GTP1_OBG GTP1/OBG
Representative CDS sequence Show only first row Show all	>Lus10006129 pacid=23148019 polypeptide=Lus10006129 locus=Lus10006129.g ID=Lus10006129.BGIv1.0 annot-version=v1.0 ATGCTTCCCATGGCTACACTCCCGCTATCTTCCTTTCTCCGACCTCAACGCGCCGACCCCACTTTATTCCTCCGCCTGCATCTCAACGAAGGTTTTCAGC TTTCTTTCCATGCTTACAACCTTTCCTACTTCGCCAGCGGGGTTAACTGTTTGTTAAAATTCCTCAATGAATTTCCACCCCGCAGGTCCAGTTTCGAAAC ATTAGGATTTTTCCGGATAGAGTGTAGAGTCGCCAGAGTGAAGCAGGCTCCGGCGAAAAACCCTGATTCCTTAGTGAAGGAGCCTCACAAGTATTTCGAC CAGCTGATCATCACTGTTCGTTCTGGCGACGGAGGGCATGGGGCAGTTCTCAAGGTGCCTAACCAGGGACTCACTAAGGCTGCTGGGAGGCAAGACGATG ACAAATCCATGTCCAAGTCCAAGTCCAATAAAAAGGGACCCTTCAAAAGGGATTTTGATGGACCGCTAATTCTTCCCATAGGGGGACACGGAGGTGATGT TGTTATCTACGCAGACGAGGGGAAAGACACTCTATTGGAATTGCATACCAAAGGACGTTTCAGCGCCAAGCGTGGCGGAAATGTGAATTCCATGGGTGTT TTTACTTCTCAGTTACGTAATGGACTTGCTTCCCCAAGCTTGCGTATTCCTGTTCCTCTTGGCACCGGTGTGAAGCATAAAAGCGGCAAGTTGTTGGCTG ATTTAACCCACTCTGGTCAGGAAATACTCGTTGCAAGAGGTGGGCAAGGAGGGATTAGCTTGCTTGCCTCACCAGAGCATAGAAAGAAAAGCTTAATGAG TCTAACCACTAATGTTCTGAGAGATGATAGTGATAAGGTATTAATTCTTGGACAACCTGGTGAAGAACTTAGTTTGGAGTTGATTCTACGAGTTTTAGCT AATGTTGGTTTAGTTGTAATTTTCACTCTGCTTGTTTTGTCTTCCATCTCCCGTCATAAACCATAG
AA sequence Show only first row Show all	>Lus10006129 pacid=23148019 polypeptide=Lus10006129 locus=Lus10006129.g ID=Lus10006129.BGIv1.0 annot-version=v1.0 MLPMATLPLSSFLRPQRADPTLFLRLHLNEGFQLSFHAYNLSYFASGVNCLLKFLNEFPPRRSSFETLGFFRIECRVARVKQAPAKNPDSLVKEPHKYFD QLIITVRSGDGGHGAVLKVPNQGLTKAAGRQDDDKSMSKSKSNKKGPFKRDFDGPLILPIGGHGGDVVIYADEGKDTLLELHTKGRFSAKRGGNVNSMGV FTSQLRNGLASPSLRIPVPLGTGVKHKSGKLLADLTHSGQEILVARGGQGGISLLASPEHRKKSLMSLTTNVLRDDSDKVLILGQPGEELSLELILRVLA NVGLVVIFTLLVLSSISRHKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006129 [exp]	0	1
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10034149 [exp]	1.7	0.8972
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10016622 [exp]	2.4	0.9003
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	2.8	0.9248
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10022002 [exp]	3.2	0.8840
AT5G19070			SNARE associated Golgi protein...		Lus10021942 [exp]	4.9	0.8603
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	5.7	0.8903
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	6.0	0.8971
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	7.4	0.8810
AT5G10620			methyltransferases (.1)		Lus10020175 [exp]	7.4	0.8943
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10027422 [exp]	9.8	0.8340

Compare expression of checked genes

Lus10006129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.