Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09850 528 / 0 XBCP3 xylem bark cysteine peptidase 3 (.1) AT5G43060 410 / 8e-141 Granulin repeat cysteine protease family protein (.1) AT1G47128 395 / 9e-135 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G19390 387 / 1e-131 Granulin repeat cysteine protease family protein (.1) AT4G35350 337 / 2e-113 XCP1 xylem cysteine peptidase 1 (.1.2) AT4G23520 322 / 2e-107 Cysteine proteinases superfamily protein (.1) AT1G20850 315 / 7e-105 XCP2 xylem cysteine peptidase 2 (.1) AT4G36880 310 / 1e-102 CP1 cysteine proteinase1 (.1) AT3G19400 295 / 4e-97 Cysteine proteinases superfamily protein (.1.2) AT1G06260 291 / 9e-96 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024801 [exp] 400 / 1e-136 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 384 / 5e-130 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10014087 [exp] 382 / 3e-129 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 380 / 1e-128 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 339 / 4e-114 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10030722 [exp] 331 / 5e-111 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10013204 [exp] 329 / 2e-110 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1) Lus10020722 [exp] 310 / 4e-103 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 310 / 5e-103 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232900 [exp] 582 / 0 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.014G024100 [exp] 399 / 2e-136 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.001G302100 [exp] 390 / 1e-132 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 388 / 7e-132 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.004G207600 [exp] 343 / 4e-116 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.011G066900 [exp] 348 / 5e-116 AT1G09850 366 / 7e-123 xylem bark cysteine peptidase 3 (.1) Potri.011G066800 [exp] 347 / 2e-115 AT1G09850 359 / 7e-120 xylem bark cysteine peptidase 3 (.1) Potri.005G256000 [exp] 329 / 1e-110 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.004G057700 [exp] 334 / 3e-110 AT1G09850 362 / 4e-121 xylem bark cysteine peptidase 3 (.1) Potri.002G005700 [exp] 325 / 1e-108 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF00396 [flax] [poplar] Granulin Granulin CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10006130 pacid=23148018 polypeptide=Lus10006130 locus=Lus10006130.g ID=Lus10006130.BGIv1.0 annot-version=v1.0 ATGAATTCATTTTCTAGGTTTCTTCTCCTGCTCCTTTTCTCCCATCTCCTCTCTTCTTCTTCTGCTTCCACTTCTTCTTCAGACATCACTGTGTTATTCG AAACCTGGTGGAGGGAACACGTCAGATCGTATCGTTCCCAAGAAGAAAGGTTGTACAGGTTACAAGTGTTCCGAGATAACTATGATTTCGTCAAGAAGCA CAACGACATCTTTTACTCTCTCGATCTTAATGCTTTTGCCGATCTCACTCACCATGAGTTTAAATCCTCCCGACTTGGCCTCTCCCCGGCTTTCAAATCC AATCGTAGGAGAGTTGTCAGTCTCGTCGGAAATGTCCCGGCAACGGTGGATTGGAGACAGCAAGGCGCTGTAACCAATGTCAAAGACCAAGGGAGCTGCG GTGCTTGTTGGTCATTCTCGGCGACTGGGGCGATTGAAGGCATAAACAAGATCGTAAGTGGATCACTGATAAGCCTTTCGGAGCAAGAGTTGATCGACTG CGACACATCTTACGATAGTGGCTGCGAGGGTGGGCTTATGGACTATGCATTCCAGTTCGTAATTGATAATAAAGGCATCGACACTGAGGAAGACTATCCA TACGTTGGAAAAGACAAATCCTGCAATAAGCAAAAGGAGAATAGGAAAGTTGTCACCATCGATGATTACGTTGACGTGCCTTCAGGCAACGAGGCGGATC TGCAAAAGGCGGTGGCGAAACAACCTGTGAGTGTTGGAGTCTGTGGAAGCGACCGAGGTTTCCAGTTGTACTCAAAGGGTATATTCAATGGACCGTGTTC AACTTCTTTGGATCATGCTATATTGATTGTAGGGTACGGTTCTGAGAATGGAGTCGATTACTGGATAGCGAAAAACTCATGGGGAACGCGGTGGGGGATG AATGGCTATATCCACATGGCTCGAAACACTGGGAATGTTCAAGGGGTCTGTGGGATTAACATGCTGGCTTCGTACCCGGAGAAAAAAGGACCAAACCCAC CATCCCCGCCACCACCTGGACCGAACAAGTGTGATCTCTTCACCAGCTGCACTGTAGGGGAAACTTGCTGCTGTACATTCCGATTTCTGGGTATCTGTTT CAGGTGGAAATGCTGCGAGATGAACTCTGCAGTTTGCTGCAATGATAAACAACACTGCTGCCCCCAGGAATATCCAGTGTGCGACACAACTAGAAACCTA TGTCTCAAGACAATGGGGAATGGCACGATCATGCAGGCTATTGATGCGAAAAGGTCTTCTAAACTAGGGAGTTGGAGCACAATGATGGAGGCTTGGATTA TGTAG
AA sequence Show only first row Show all	>Lus10006130 pacid=23148018 polypeptide=Lus10006130 locus=Lus10006130.g ID=Lus10006130.BGIv1.0 annot-version=v1.0 MNSFSRFLLLLLFSHLLSSSSASTSSSDITVLFETWWREHVRSYRSQEERLYRLQVFRDNYDFVKKHNDIFYSLDLNAFADLTHHEFKSSRLGLSPAFKS NRRRVVSLVGNVPATVDWRQQGAVTNVKDQGSCGACWSFSATGAIEGINKIVSGSLISLSEQELIDCDTSYDSGCEGGLMDYAFQFVIDNKGIDTEEDYP YVGKDKSCNKQKENRKVVTIDDYVDVPSGNEADLQKAVAKQPVSVGVCGSDRGFQLYSKGIFNGPCSTSLDHAILIVGYGSENGVDYWIAKNSWGTRWGM NGYIHMARNTGNVQGVCGINMLASYPEKKGPNPPSPPPPGPNKCDLFTSCTVGETCCCTFRFLGICFRWKCCEMNSAVCCNDKQHCCPQEYPVCDTTRNL CLKTMGNGTIMQAIDAKRSSKLGSWSTMMEAWIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10006130 [exp]	0	1
					Lus10004960 [exp]	3.7	0.8528
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10005458 [exp]	6.3	0.8763
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028470 [exp]	7.5	0.8803
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	7.6	0.8877
AT2G35360			ubiquitin family protein (.1)		Lus10004553 [exp]	9.2	0.8665
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10017045 [exp]	11.4	0.8930
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000356 [exp]	16.5	0.8215
AT4G10265			Wound-responsive family protei...		Lus10039753 [exp]	17.4	0.8508
AT1G74940			Protein of unknown function (D...		Lus10027642 [exp]	20.7	0.8330
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	23.1	0.8695

Compare expression of checked genes

Lus10006130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.