Plant FIBer expression Database

Lus10006135 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33800 42 / 7e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033772
[exp]
209 / 1e-68 AT4G33800 69 / 2e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G292100
[exp]
90 / 5e-22 AT4G33800 85 / 1e-20 unknown protein
Potri.014G015000
[exp]
46 / 5e-06 AT4G33800 63 / 2e-12 unknown protein
Potri.002G117600
[exp]
43 / 4e-05 AT4G33800 72 / 3e-16 unknown protein
Potri.009G086600
[exp]
0 / 1 AT4G33800 77 / 1e-17 unknown protein
PFAM info
Representative CDS sequence
>Lus10006135 pacid=23176725 polypeptide=Lus10006135 locus=Lus10006135.g ID=Lus10006135.BGIv1.0 annot-version=v1.0
ATGATGAATTCATCAGAAGAATGCAGCAGTGGGTGTGAGTCTGGGTGGACTCTTTACCTGGAACACTCCTTTCTCCACGGCAAGCAACACCAGATTGACG
ATGAGGAGGTGGAAGGAACTGATATTGAGGATTTGTCAATGGTTTCGGACGCATCCTCTGGCCCTCCCTTATATTCCCATGACGAAGAAACCGGCTCTTA
TTTTATCAGTGGCCAGGATGATAATAATCACTACCCATCTTCGAATCAAGAGGGGAATCTGAGCACTAGTACCATAAGTGGTGGTGGGAGAAGCAAGAAA
TATCAGATGAAGAAGAAGAATAAGAAGAAGAAAGTAGTTGAGGAACAGAGTAGTCAAGAGAGACAGATTCATCCAAACCAAGTTATGCGGCCAATGGGGG
GTTGCAATTTCTTGGATGATACTGCTAGCTCCCCTGCATTCAACAACACCAGCATTCCCCAAGCCATGGATTATTCACCAGCTTTCTCTGCTACCCATTT
TCAGCAGAGGGGAACTGGAGTATATGATGAGCAATTCGGATATGTACAACCTTCATTATCAGGAAATTATCTTCAAAATCACCAGTTAAGTCTCAGCTAT
CAACTATCTTTTGCAGTTAGTTAA
AA sequence
>Lus10006135 pacid=23176725 polypeptide=Lus10006135 locus=Lus10006135.g ID=Lus10006135.BGIv1.0 annot-version=v1.0
MMNSSEECSSGCESGWTLYLEHSFLHGKQHQIDDEEVEGTDIEDLSMVSDASSGPPLYSHDEETGSYFISGQDDNNHYPSSNQEGNLSTSTISGGGRSKK
YQMKKKNKKKKVVEEQSSQERQIHPNQVMRPMGGCNFLDDTASSPAFNNTSIPQAMDYSPAFSATHFQQRGTGVYDEQFGYVQPSLSGNYLQNHQLSLSY
QLSFAVS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G33800 unknown protein Lus10006135
[exp]
0 1
AT3G18960 B3 AP2/B3-like transcriptional fa... Lus10027943
[exp]
5.7 0.9826
AT1G69120 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-bo... Lus10017870
[exp]
6.1 0.9751
Lus10029057
[exp]
7.6 0.9219
AT1G24260 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-... Lus10003125
[exp]
9.4 0.9799
AT5G15800 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-... Lus10034663
[exp]
11.5 0.9797
AT1G24260 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-... Lus10015765
[exp]
13.3 0.9797
AT4G27570 UDP-Glycosyltransferase superf... Lus10013368
[exp]
14.8 0.9797
AT4G30770 Putative membrane lipoprotein ... Lus10015689
[exp]
16.2 0.9797
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10022473
[exp]
17.5 0.9797
AT4G10950 SGNH hydrolase-type esterase s... Lus10023070
[exp]
18.8 0.9797

Lus10006135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.