Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49975 135 / 4e-42 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033771 [exp] 198 / 1e-66 AT1G49975 157 / 2e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G292000 [exp] 147 / 2e-46 AT1G49975 154 / 2e-49 unknown protein Potri.009G086400 [exp] 62 / 1e-13 AT1G49975 82 / 1e-21 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05479 [flax] [poplar] PsaN Photosystem I reaction centre subunit N (PSAN or PSI-N)
Representative CDS sequence Show only first row Show all	>Lus10006137 pacid=23176734 polypeptide=Lus10006137 locus=Lus10006137.g ID=Lus10006137.BGIv1.0 annot-version=v1.0 ATGAGTACCAGTTCACTTGTTTCCCAAAGCGTTTTGATGGCATTTACTGCCACTGTCAACAAATTTGCTTCTCCAAACGTTCACGCCGTCCCCAGAGCTC AACCGGCAAGAAGAGATTCCTCGTCCTCTTCATCGGCGGCCGCTGTCGGAAGAAGAGGAGTCATGTTCTCCGCCATTGTTGGGGCTTATCCAGCTGCTGC TGAATCCAAAACTGACCTTCTCAACAAATATTTGAAGAAATCAGAGGACAACAAGGCCAAAAATGACAAGGAGAGATTGGATAGCTACTACAAGAGGAAC TACAAGGATTACTTTGACTTTGTGGAAGGATCACTGAGAGGTAAGAAAGAAGAGGAGCTTTCTGACTCAGAAAAAGGAATTATCGAGTGGCTCAAGTCCA ACAAATAA
AA sequence Show only first row Show all	>Lus10006137 pacid=23176734 polypeptide=Lus10006137 locus=Lus10006137.g ID=Lus10006137.BGIv1.0 annot-version=v1.0 MSTSSLVSQSVLMAFTATVNKFASPNVHAVPRAQPARRDSSSSSSAAAVGRRGVMFSAIVGAYPAAAESKTDLLNKYLKKSEDNKAKNDKERLDSYYKRN YKDYFDFVEGSLRGKKEEELSDSEKGIIEWLKSNK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49975			unknown protein		Lus10006137 [exp]	0	1
AT5G15802			unknown protein		Lus10022232 [exp]	1.0	0.9644
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	2.0	0.9630
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	2.8	0.9232
AT2G01870			unknown protein		Lus10009946 [exp]	3.2	0.9384
AT1G49975			unknown protein		Lus10033771 [exp]	5.7	0.9425
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	7.7	0.9433
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	8.5	0.9196
AT5G37360			unknown protein		Lus10004762 [exp]	9.5	0.9365
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10042759 [exp]	12.1	0.9116
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	12.2	0.8952

Compare expression of checked genes

Lus10006137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.