Plant FIBer expression Database

Lus10006138 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23770 53 / 4e-09 F-box family protein (.1)
AT1G23780 41 / 7e-05 F-box family protein (.1)
AT1G70360 38 / 0.0006 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033762
[exp]
88 / 4e-21 AT1G23780 199 / 4e-57 F-box family protein (.1)
Lus10012441
[exp]
87 / 6e-21 AT1G23780 215 / 3e-63 F-box family protein (.1)
Lus10011411
[exp]
46 / 2e-06 AT1G23770 110 / 5e-28 F-box family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G109700
[exp]
70 / 6e-15 AT1G23780 244 / 2e-74 F-box family protein (.1)
PFAM info
Representative CDS sequence
>Lus10006138 pacid=23176722 polypeptide=Lus10006138 locus=Lus10006138.g ID=Lus10006138.BGIv1.0 annot-version=v1.0
ATGGAGGAGATTGATGGCGAATCATCTGTCGATGTTGCTAGCAACAGTACAAGGTTTTCCGAACAATCAACCTTGCGGAAGGCGCTGAAGCAAGAACTGG
GTGAAAGTTCTATCAGCTGTCAGAACCTCTTGGTAACTGCCGTTCACGCAGTTCTACTTGACTCTGGCTTTGTTAGGCTTGATCAAACGGAGCCGCTACA
CCTAGCCGAGAAGTGGCCTGCGTCAATCTCTTATACACTTCCTGAGATTATGGGTCAGGATAATAAGGGATCAGTAGTGATGAAGTTCGAGACAGTGAAG
TTGTTCTTCAATGTATCTGGTTCACTGGCCAAAAACGGTTCGAGGGTGCATTGTCTTGGAATTCTGGAAGATTGTTAA
AA sequence
>Lus10006138 pacid=23176722 polypeptide=Lus10006138 locus=Lus10006138.g ID=Lus10006138.BGIv1.0 annot-version=v1.0
MEEIDGESSVDVASNSTRFSEQSTLRKALKQELGESSISCQNLLVTAVHAVLLDSGFVRLDQTEPLHLAEKWPASISYTLPEIMGQDNKGSVVMKFETVK
LFFNVSGSLAKNGSRVHCLGILEDC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G23770 F-box family protein (.1) Lus10006138
[exp]
0 1
AT3G25570 Adenosylmethionine decarboxyla... Lus10000156
[exp]
3.2 0.8313
AT1G23780 F-box family protein (.1) Lus10006139
[exp]
3.2 0.8601
AT4G28703 RmlC-like cupins superfamily p... Lus10014252
[exp]
4.2 0.8192
AT4G36020 CSDP1 cold shock domain protein 1 (.... Lus10001724
[exp]
10.0 0.7584
AT3G61800 unknown protein Lus10004000
[exp]
17.0 0.8500
AT3G25570 Adenosylmethionine decarboxyla... Lus10034412
[exp]
17.2 0.7850
AT1G13960 WRKY WRKY4 WRKY DNA-binding protein 4 (.1... Lus10030424
[exp]
19.7 0.8055
AT4G08500 ARAKIN, ATMEKK1... MAPK/ERK kinase kinase 1 (.1) Lus10003745
[exp]
20.4 0.7971
AT4G16760 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) Lus10040183
[exp]
25.6 0.8419
AT1G27840 ATCSA-1 Transducin/WD40 repeat-like su... Lus10007742
[exp]
26.4 0.8193

Lus10006138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.