Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17870 777 / 0 ATEGY3 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1) AT5G35220 105 / 9e-24 EGY1 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) AT5G05740 82 / 3e-16 ATEGY2 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) AT5G35210 56 / 6e-08 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005688 [exp] 103 / 2e-23 AT5G35220 776 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Lus10020304 [exp] 100 / 3e-22 AT5G35220 781 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Lus10011873 [exp] 93 / 1e-19 AT5G05740 648 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10022806 [exp] 84 / 1e-16 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G289700 [exp] 818 / 0 AT1G17870 755 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1) Potri.013G064700 [exp] 102 / 7e-23 AT5G35220 766 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Potri.008G066500 [exp] 92 / 2e-19 AT5G05740 610 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF02163 [flax] [poplar] Peptidase_M50 Peptidase family M50
Representative CDS sequence Show only first row Show all	>Lus10006140 pacid=23176721 polypeptide=Lus10006140 locus=Lus10006140.g ID=Lus10006140.BGIv1.0 annot-version=v1.0 ATGCACGCATCATGTTCGAAGAAATGCCAATTTGGAAGCAAAACACACCTCGCGGACTTTGATCTTGTAAGGAAGGGAGAGCCACGTTTGAAAACTGTTA TTAGCCTTTCGGCGAAAGAGGAGCAAGTGGCTGTGGCTGATGATGATGAGAAGAAGCGAGAGGATGAAAAGGATGATAAGAAAGATGAGCAAGAGCTGCA GGAGAAAGATTGGAAGACCGATGAGGAGTTCAAGAAGTTCATGGGGAACCCTTCCATCGAGGCTGCAATAAAGCTCGAGAAGAAGAGGGCTGATAGGAAG CTTAAGGAGCTTGACAAAGAAAACAGTGACAACCCACTCGTAGGGGTCTTCAACAGATTTATTCGTGATAGAATAAACAAAGAGAAAGAGAGGTTAGAGA AGGCTGAAGAGACTTTCAAAGCCCTTGATCTAAACAAGTTGAGAAATTGTTTTGGATTTGATACATTCTTCGCCACTGATGTTCGAAGATTTGGTGATGG TGGAATTTTCATCGGAAACTTGAGGCGACCTATTGAGGAAGTCATCCCCAAACTGGAGAAGAAGCTTTCTGAAGCTGCAGGGAGGGATGTGGTTGTATGG TTTATGGAAGAGAAGAAAGATGACATTACGAAACAGGCATGTGCGGTGCAACCCAAGGCAGAGATTGATCTCCAGTTTGAAACAACCAAACTGAGTAACG CTTATGGATATTTCAGCGCTATTGTTCTCTGTGTGGCAACTTTTGGGACTATATCTCTCATGAGTGGCTTTTTCCTTAAGCCAGATGCAACTATAGATGA CTATATTTCTAATGTCGTTCCTCTTTTCGGTGGCTTCCTCACCATCTTGGGAGTTTCTGAGATATCAACTCGAGTAACTGCTGCTCGTTATGGCGTTAAA CTCAGCCCTTCGTTCCTAGTTCCATCCAATTGGACAGGATGCTTGGGAGTAATGAATAACTACGAATCACTGCTTCCTAATAAGAAGGCACTTTTCGACA TCCCAGTAGCACGAACAGCTAGTGCATACTTGACGTCATTGGTGCTAGCAGTTGCTGCTTTTGTTGCTGATGGTAGCTTCAACGGAGGTGATAACGCACT GTACATAAGGCCGCAATTCTTCTACAACAACCCCTTACTTTCATTCATCCAGTTTGTAATTGGACCTTACACGGATGACCTCGGGAATGTACTGCCTTAT GCAGTGGAGGGCGTGGGAGTTCCTGTTGATCCCCTAGCTTTTGCTGGACTTTTAGGAATGGTGGTGACTTCATTGAACCTTTTGCCCTGCGGAAGGCTTG AAGGAGGCCGGATAGCACAAGCCATGTTCGGGAGAAGTACAGCAAAGCTACTATCCCTAGCCACATCACTCCTTTTGACAATAGGCAGCTTGAGTGGCAG CGTGCTCTGTCTAGCTTGGGGACTATTCGCTACCTTTTTCCGTGGGGGAGAAGAGTTACCTGCTAAAGATGAGATCACACCTTTGGGAAATGACAGGTTT GCTTGGGGCATTGTTCTTGGCCTCATTTGTTTCCTCACTCTTTTCCCCAACGGAGGAGGAACGTTTTCGAACCCTATATTCGGCGACCCCTTTTTCCGCG GGTGA
AA sequence Show only first row Show all	>Lus10006140 pacid=23176721 polypeptide=Lus10006140 locus=Lus10006140.g ID=Lus10006140.BGIv1.0 annot-version=v1.0 MHASCSKKCQFGSKTHLADFDLVRKGEPRLKTVISLSAKEEQVAVADDDEKKREDEKDDKKDEQELQEKDWKTDEEFKKFMGNPSIEAAIKLEKKRADRK LKELDKENSDNPLVGVFNRFIRDRINKEKERLEKAEETFKALDLNKLRNCFGFDTFFATDVRRFGDGGIFIGNLRRPIEEVIPKLEKKLSEAAGRDVVVW FMEEKKDDITKQACAVQPKAEIDLQFETTKLSNAYGYFSAIVLCVATFGTISLMSGFFLKPDATIDDYISNVVPLFGGFLTILGVSEISTRVTAARYGVK LSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLVLAVAAFVADGSFNGGDNALYIRPQFFYNNPLLSFIQFVIGPYTDDLGNVLPY AVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRSTAKLLSLATSLLLTIGSLSGSVLCLAWGLFATFFRGGEELPAKDEITPLGNDRF AWGIVLGLICFLTLFPNGGGTFSNPIFGDPFFRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	0	1
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	1.0	0.9591
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	2.4	0.9527
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10003560 [exp]	3.2	0.9247
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023423 [exp]	3.5	0.9205
AT1G45688			unknown protein		Lus10025793 [exp]	3.7	0.9175
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	4.6	0.9353
AT4G16490			ARM repeat superfamily protein...		Lus10010499 [exp]	6.0	0.9118
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	6.0	0.9308
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10024721 [exp]	6.2	0.8959
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	6.3	0.9078

Compare expression of checked genes

Lus10006140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.