Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35420 452 / 7e-161 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G19440 247 / 3e-80 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 243 / 9e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09510 241 / 4e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 239 / 4e-77 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G51410 236 / 4e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 233 / 1e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 228 / 5e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 227 / 6e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G25460 225 / 1e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008668 [exp] 248 / 1e-80 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 247 / 2e-80 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 242 / 3e-78 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035016 [exp] 240 / 2e-77 AT1G68540 468 / 2e-167 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014363 [exp] 234 / 5e-75 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 233 / 1e-74 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 231 / 7e-74 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 230 / 2e-73 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10002302 [exp] 229 / 2e-73 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G138600 [exp] 468 / 3e-167 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.008G120200 [exp] 252 / 2e-82 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G256400 [exp] 251 / 5e-82 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 248 / 9e-81 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 247 / 2e-80 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G125400 [exp] 241 / 4e-78 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G057800 [exp] 238 / 2e-76 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 228 / 1e-72 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G033600 [exp] 223 / 1e-70 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.005G229500 [exp] 223 / 3e-70 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10006141 pacid=23176731 polypeptide=Lus10006141 locus=Lus10006141.g ID=Lus10006141.BGIv1.0 annot-version=v1.0 ATGGAAGAAAGCAAAGGCAAAGTGTGTGTGACAGGGGCGTCTGGATTTCTGGCTTCATGGCTAATCAAGCGCCTCCTCTTGTCAGGATACCATGTCGTTG GAACTGTTAGAGATCCAGAAAATGAGAAGAAGACGGGACATCTATGGAAGCTGGAAGGAGCTAAAGAGAGACTGCAACTAATGAAAGGTGATCTAATGGA AGAAGGAAGCTTTGACGAAGCAATCAATGGATGCCACGGCGTCTTCCACACTGCATCCCCTGTCGAAATCTTGGAACCTGCAATCCAAGGCACACTCAAC GTGTTACGGTCTTGCAAGAAGAATCCGCTTCTGAGACGTGTGGTTTTGACATCCTCGTCATCGACTGTGCGAGTGAGGGAGAGTTTCGGTCCGAATCAAT GTGCAGATGAATCCCACTGGAGTTCTGAGGAACTGTGTGAACGACTACAAATATGGTACACATTGTCGAAAATATTGGCCGAGAAGAATGCATGGGAGTT CTGCAAGGAGAATGGGATCGACATGGTAGCTGTTCTTCCATCGTTCGTGATCGGACCCAGCTTGCCCTCTGAACTTTGCTCTACTGCTTCTGATGTCCTC GGCCTTTTCAAAGGGGAAACAGAGAAATTCAAGTGGCATGGAAGGATGGGATACGTTCACATAGACGATGTTGCAGAGTGCCACATCCTTTTGATGGAGA CCAAAAGTGCGAGTGGGCGTTACCTTTGCAGCTCAACTGTACTAGACAACAATGAACTGGCTTCCTTCTTGTCCCTCCGATATCCGTCGTACGGAATCCC CAAAAGGTTTCCGGAGCTGAACAGGCCATACTATGAGTTTAATACATCAAAGGTGAAAGGGTTGGGAATGAGTTTCAAGTCAATTGAAGAAATGTTTGAT GATTGCATTGCATCACTAGTGGAGCAAGGCCATCTCCCACCGACTACTCCAAACACCATCACCCCCTTAGTCGCTGTTTGA
AA sequence Show only first row Show all	>Lus10006141 pacid=23176731 polypeptide=Lus10006141 locus=Lus10006141.g ID=Lus10006141.BGIv1.0 annot-version=v1.0 MEESKGKVCVTGASGFLASWLIKRLLLSGYHVVGTVRDPENEKKTGHLWKLEGAKERLQLMKGDLMEEGSFDEAINGCHGVFHTASPVEILEPAIQGTLN VLRSCKKNPLLRRVVLTSSSSTVRVRESFGPNQCADESHWSSEELCERLQIWYTLSKILAEKNAWEFCKENGIDMVAVLPSFVIGPSLPSELCSTASDVL GLFKGETEKFKWHGRMGYVHIDDVAECHILLMETKSASGRYLCSSTVLDNNELASFLSLRYPSYGIPKRFPELNRPYYEFNTSKVKGLGMSFKSIEEMFD DCIASLVEQGHLPPTTPNTITPLVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	0	1
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	1.0	0.9837
AT5G25910		AtRLP52	receptor like protein 52 (.1)		Lus10016112 [exp]	1.7	0.9293
					Lus10040835 [exp]	2.0	0.9547
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10029335 [exp]	3.7	0.8096
AT1G65810			P-loop containing nucleoside t...		Lus10035774 [exp]	3.9	0.8757
AT2G29880			unknown protein		Lus10005028 [exp]	4.0	0.8076
					Lus10009381 [exp]	4.0	0.9089
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10026678 [exp]	5.7	0.7340
AT3G10910			RING/U-box superfamily protein...		Lus10033425 [exp]	6.2	0.7544
					Lus10041320 [exp]	6.5	0.8469

Compare expression of checked genes

Lus10006141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.