Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19670 566 / 0 ATPRP40B pre-mRNA-processing protein 40B (.1) AT1G44910 560 / 0 ATPRP40A pre-mRNA-processing protein 40A (.1.2) AT3G19840 57 / 1e-07 ATPRP40C pre-mRNA-processing protein 40C (.1) AT2G41020 48 / 3e-05 WW domain-containing protein (.1.2) AT4G16280 45 / 0.0002 FCA RNA binding;abscisic acid binding (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033770 [exp] 1519 / 0 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10018659 [exp] 537 / 6e-176 AT1G44910 834 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10007723 [exp] 534 / 1e-173 AT1G44910 828 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10030562 [exp] 86 / 1e-16 AT3G19840 671 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10012908 [exp] 74 / 6e-13 AT3G19840 673 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10006305 [exp] 47 / 1e-05 AT4G16280 68 / 1e-13 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 47 / 0.0001 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10027285 [exp] 45 / 0.0003 AT2G41020 427 / 1e-146 WW domain-containing protein (.1.2) Lus10029574 [exp] 45 / 0.0005 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G289800 [exp] 894 / 0 AT1G44910 667 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.009G085400 [exp] 880 / 0 AT1G44910 651 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.014G013100 [exp] 655 / 0 AT1G44910 808 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.010G170400 [exp] 106 / 4e-23 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1) Potri.010G147900 [exp] 52 / 3e-06 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 46 / 0.0001 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) Potri.006G032200 [exp] 44 / 0.0005 AT2G41020 410 / 2e-140 WW domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0584 [flax] [poplar] FF PF01846 [flax] [poplar] FF FF domain
Representative CDS sequence Show only first row Show all	>Lus10006142 pacid=23176728 polypeptide=Lus10006142 locus=Lus10006142.g ID=Lus10006142.BGIv1.0 annot-version=v1.0 ATGGCCAACAATCCACAGTTTTCGAGCTTACCGCCTCCTCCACCTCATGTAGTTGGTTCTGTTGATGCTCCTCGAAGTTATGCTCCAGGTCCACCGCCGA TGCAATTCCGATCTGTTGCTCCACCAGTACAACATCAGTCTCAGCAGTTCATTTCTGTGCCTTCTCAACATTTTCAACCTGTTGGCCGTGGTGGTCCTGT GATGAACCCTGGGATGCTTTCTCAACCTCAGCAAGTCCAGTTCCCACAAGCTATGCAGCATATTGCTGTAATGCCTAGCCAACCTGGCCATGGTCCTCCA TCTCAGCCAATTTCACTGTCAAATAATCAACCAAATAGGCATGTTGTTCCTGGGACATCACTGCCTCCACCGCCTCATCAAAATCCAACTGGTTACCCTT CTGGTTTAGGTGGCCCATCAATGTACAATTTTGGATCTGTTCCATACCCTCCTCCACCAGTGAATTATAATGCTGTAACCCAGTTTCAGCCTATTTCTCA AGTGCCAGTACCAAGTGCTCCAGCTCCATCTCAGCCGGCATTATCTTCAGCGAACTTGGGCCCTACTTCTGATGATCCGTTGCATCGCAGCGGTGAACAA TTGTCAATTACCCATCCTAATGTTCTGAAAACAAGTATAGACTCTAAGCCTCCTGAAGTTGTCTTGACAGATTGGATAGAGCATGTGTCTGGTGCTACTG GAAGGAGATATTATTACAACAAGAAAACAAGAATATCCAGTTGGGAAAAACCGTTTGAATTGATGACTCCAATTGAGAGGGCAGATTCATCTACTGACTG GCAGGAAGTCACTAGTCCAGATGGAAGAAAGTATTACCACAACAAGGTGTCCAAGCAGTCCAAGTGGGAGATCCCTGAGGAATTGAAGTTGGCTCGCCAG CGAATAGAAAAAGCACATACCGTTGAGATGCCAGAAGAAAGTTCTCATGCCTCGGCTTCTGACCTCCACGGATCAGACCCTCCATTATCCTTGGTTCAGG ATGCACCATCTAGTCACGTCCCTGTTGAACCTGTTGCCGCTGCTGTTGTGAAATCTCAGACTTCTGAATCATCTCCTTTAGCTGCTATGACTTCTTCTGT AGCAACTGATATTGATGAACAAAAACCAGCTTTGCCTGAAGGCGCTGCTGCAGTCGTTGCCACATTGGTTGATCCTGAACCAATATCCATGTACGGGTCA TTTCCCCAAGGGTTATATCCGATTAACTCCACCAACAGTTCACCTGGAGATCCTAGTATTGAAGAACAAGTTCCTATGCTAGATCAAGAGGATGCAGGAA AAGACATGCAGACAAGTGAGAAACTCAACAATGTTACTGTTGAAGATAAAACAGCTACGAGAGACCCCTTGACTTATGCTGACAAGCAGGAGTCAAAAGA TTTATTTAAAACACTTTTGGAGTCCGCCAATGTTGGGCTAGACTGGACCTGGGAGCAGGCCATGCGTGTAATAGTTACCGATAAAAGATACGGTGCTCTC AAAACACTTGGAGAAAGGAAGCAAACATTCAATGAGTATTTGGCTGAAAGGAGAAAACAAGAAGTTGAAGAGAGGAAAACTAAGCAGAAGAAAGCACGAG ATGATTTCAGGAATATGTTAGAAGAGTCGAGTGATATACCTTTAGGAACCCGATGGAGCAAAGTAATGCCTTTGTTTGAAAATGATGAACGATACTACGC GGTTGAAAGAGAAAGAGATCGAAAGGATCTATTCGATACATATTTGAAGGAGCTAACAGACAAGGAACGTGCAAGAGCTCATGAGGAGCGTAAGCAAAAT GTTATGGAGTACATGCAGTTTTTACAGTCCTGTGATTTTATCAAGGCAAACACACAATGGCGGAAAGTTCAAGAACGGTTAGAGGCTGATGAAAGATGCT CACGACTTGAAAAAATTGATAGGCTGGAGATATTTCAGGATTACTTGCGTGATTTGGAGAAAGAAGAAGAGGAGCAAAGAAAGATACAGAAGGAGGAAAT GAGAAAGGCAGAGCGTAAAAATCGTGACGAGTTCCGGAAACTGTTGGAAGAACATGTAGCTGCTGGTACCATCACAACCAAAACTCACTGGCGTGATTAC TACATGAAGGTTAAAGATCTACCTGCTTATTTAGCTGTTATATCAAATGCATCTGGCTTAAGTGCTAAAGAATTGTTTGAAGATGTTGCTCAGGAGCTGG AGAAACAGTATCATGAAGACAAAACTCGTGTAAAAAATGCTGTGAAGTTTAAAAAGGTTCTTTTGGCTTCAACATGGACCCTAGAAGATTTTAAAGCTGC TATTGAACAGGATGCTGGCTCCCCTCTTGTATCCGATGCAAATTTACAGATTATATATGAAGAATTGCTTGAAAGAGCTAAAGAAAAGGAGGAGAAAGAG GCGAAAAGGCGCAAGCGTCTTGCAGATGATTTCCTTAATCTGTTGCATTCCATTAAGGAGATAAGTGGATCTTCAAAGTGGGAAAATTGCAAAGAGCAAG TTGAGGATAGAAGAGAGTTCAGTTCAATTGGGGAAGAGAGCATCTGTAAGGAGATTTTTGAGGAATACGTAAGTCAACTGAAAGAACAGGAAAAGGAGAA CGAACGCAGAAGAAAAGAGGAGAAGGCTAGAAAGGAACGAGAGAAAGACGAAAGAGAGAGGAGAAAGTCGAAACACAGAAGGGAGAGAGATATAGGTCAG GAGAGGGAGAAGGATCACCCAAAGGAGGAAGTGGAGAGCGAGAGTGGTGATCATTTTGATGGAAGAAGATTGAGCAAAGACAGCAGCAGTATCCAGAGAC AAAGGAAGAGGCATCATCAACATGGCGGGGAATTAGATGATCATGACGAAAAAGGTAGTCACAGACCCAGTAGCGACCATAAAAGAGGAAGATGGCACGC ATCTACTCCAGAGTCTGAGAACGAAAGCAGGCATAGAAGGCAGAAGAGAGATCATCATAATGGTTCTTCTCGTAGGGAAGGTAATCTGGAGGAGCTTGAA GATGGGGAGTTTGGCGAGGAAGGGGAAGCTCGTTAA
AA sequence Show only first row Show all	>Lus10006142 pacid=23176728 polypeptide=Lus10006142 locus=Lus10006142.g ID=Lus10006142.BGIv1.0 annot-version=v1.0 MANNPQFSSLPPPPPHVVGSVDAPRSYAPGPPPMQFRSVAPPVQHQSQQFISVPSQHFQPVGRGGPVMNPGMLSQPQQVQFPQAMQHIAVMPSQPGHGPP SQPISLSNNQPNRHVVPGTSLPPPPHQNPTGYPSGLGGPSMYNFGSVPYPPPPVNYNAVTQFQPISQVPVPSAPAPSQPALSSANLGPTSDDPLHRSGEQ LSITHPNVLKTSIDSKPPEVVLTDWIEHVSGATGRRYYYNKKTRISSWEKPFELMTPIERADSSTDWQEVTSPDGRKYYHNKVSKQSKWEIPEELKLARQ RIEKAHTVEMPEESSHASASDLHGSDPPLSLVQDAPSSHVPVEPVAAAVVKSQTSESSPLAAMTSSVATDIDEQKPALPEGAAAVVATLVDPEPISMYGS FPQGLYPINSTNSSPGDPSIEEQVPMLDQEDAGKDMQTSEKLNNVTVEDKTATRDPLTYADKQESKDLFKTLLESANVGLDWTWEQAMRVIVTDKRYGAL KTLGERKQTFNEYLAERRKQEVEERKTKQKKARDDFRNMLEESSDIPLGTRWSKVMPLFENDERYYAVERERDRKDLFDTYLKELTDKERARAHEERKQN VMEYMQFLQSCDFIKANTQWRKVQERLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQRKIQKEEMRKAERKNRDEFRKLLEEHVAAGTITTKTHWRDY YMKVKDLPAYLAVISNASGLSAKELFEDVAQELEKQYHEDKTRVKNAVKFKKVLLASTWTLEDFKAAIEQDAGSPLVSDANLQIIYEELLERAKEKEEKE AKRRKRLADDFLNLLHSIKEISGSSKWENCKEQVEDRREFSSIGEESICKEIFEEYVSQLKEQEKENERRRKEEKARKEREKDERERRKSKHRRERDIGQ EREKDHPKEEVESESGDHFDGRRLSKDSSSIQRQRKRHHQHGGELDDHDEKGSHRPSSDHKRGRWHASTPESENESRHRRQKRDHHNGSSRREGNLEELE DGEFGEEGEAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19670		ATPRP40B	pre-mRNA-processing protein 40...		Lus10006142 [exp]	0	1
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10027993 [exp]	1.0	0.8487
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10004932 [exp]	5.6	0.7975
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	7.2	0.8442
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	17.3	0.8480
					Lus10012802 [exp]	18.3	0.8028
AT4G14990			Topoisomerase II-associated pr...		Lus10010445 [exp]	23.3	0.7313
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026268 [exp]	24.8	0.8269
AT1G02330			unknown protein		Lus10026267 [exp]	26.5	0.8004
					Lus10009514 [exp]	29.6	0.8309
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029625 [exp]	34.0	0.8040

Compare expression of checked genes

Lus10006142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.