Plant FIBer expression Database

Lus10006143 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31890 100 / 1e-23 ATRAP RAP (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033769
[exp]
347 / 1e-116 AT2G31890 692 / 0.0 RAP (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G001600
[exp]
184 / 4e-54 AT2G31890 739 / 0.0 RAP (.1)
PFAM info
Representative CDS sequence
>Lus10006143 pacid=23176730 polypeptide=Lus10006143 locus=Lus10006143.g ID=Lus10006143.BGIv1.0 annot-version=v1.0
ATGGACGGGTTACTTGCCGCGTTTCCTCATCGTAGTTGCTTACAATCTCTCATTTTCAATCCTACACTGGTCTCCAATATTCCACCGATTAAATTAGGAA
CTGTGTCTCTTAATCAAAGGCTCCAGTTAGGTGTTCAAGGAGTGAAATGTATAAATTCACCAACTACTGATACTAGTGGTGTTGTGGATGAAGAGGGTGT
TAAGGATGTTGAAGACTGGGAATTAGAGTTTCTTGGAAAGGCTGGTTCTTCGGGGTTTCGAGAATCATCCACGAAAAGGAAGATGGGCAAAGGATCGACG
TTGTTGGAGGGTGAAGATCAGATGGATTGGTATTTGAGGGCGAGGAAGGTTGCCCTCAGATCGATTGAGACAAGGGGATTGAGTTACAAGATGGAACAAT
TGGTTAGTGGGAACACAAAAAAGAAGAAAAAAACCAAGAAAAGATTGGTGACCAAAACCAAGAGGAAGAAGAATGAACAAGAATTTGAAGAGGATCTGGA
CTTGGATGAGGTAGAACGGATTCTCGATGATGATACTTCTGACCTCCAAAGAAAAGTTAGTATGATGGGGGACGGCATGTTTGAAGAGCAGAAGGAGAAG
ACAATGGAAGAGTTTGTAAAGAAGTTGTCACAGTTCTCTGGACCTTCTGATCGTAAGAAGGAGGTTAATATGAACAGAGCAATTGTCGAAGCTCAAACTG
CTGAAGAAGTGATGGAAGTCACTGCCGATGTTATCATGGCCGGGGGGTAA
AA sequence
>Lus10006143 pacid=23176730 polypeptide=Lus10006143 locus=Lus10006143.g ID=Lus10006143.BGIv1.0 annot-version=v1.0
MDGLLAAFPHRSCLQSLIFNPTLVSNIPPIKLGTVSLNQRLQLGVQGVKCINSPTTDTSGVVDEEGVKDVEDWELEFLGKAGSSGFRESSTKRKMGKGST
LLEGEDQMDWYLRARKVALRSIETRGLSYKMEQLVSGNTKKKKKTKKRLVTKTKRKKNEQEFEEDLDLDEVERILDDDTSDLQRKVSMMGDGMFEEQKEK
TMEEFVKKLSQFSGPSDRKKEVNMNRAIVEAQTAEEVMEVTADVIMAGG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G31890 ATRAP RAP (.1) Lus10006143
[exp]
0 1
AT5G56440 F-box/RNI-like/FBD-like domain... Lus10001507
[exp]
4.2 0.6817
AT5G24690 Protein of unknown function (D... Lus10022966
[exp]
8.5 0.6572
AT2G38280 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5... Lus10027814
[exp]
9.5 0.7021
AT4G34100 RING/U-box superfamily protein... Lus10019839
[exp]
10.4 0.6954
AT5G14970 unknown protein Lus10014506
[exp]
11.2 0.6759
AT3G53970 proteasome inhibitor-related (... Lus10032055
[exp]
12.0 0.6323
AT5G56450 PM-ANT Mitochondrial substrate carrie... Lus10013518
[exp]
12.1 0.6747
AT2G44520 COX10 cytochrome c oxidase 10 (.1) Lus10019514
[exp]
15.7 0.6651
AT1G18660 zinc finger (C3HC4-type RING f... Lus10019075
[exp]
19.5 0.6245
AT4G17410 DWNN domain, a CCHC-type zinc ... Lus10021702
[exp]
24.4 0.5517

Lus10006143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.