Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31890 436 / 4e-150 ATRAP RAP (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033769 [exp] 630 / 0 AT2G31890 692 / 0.0 RAP (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001600 [exp] 500 / 4e-175 AT2G31890 739 / 0.0 RAP (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF08373 [flax] [poplar] RAP RAP domain
Representative CDS sequence Show only first row Show all	>Lus10006144 pacid=23176732 polypeptide=Lus10006144 locus=Lus10006144.g ID=Lus10006144.BGIv1.0 annot-version=v1.0 ATGTCGGAAATGGATAGAGTTGCTGAAGTTGCCTTAACCAGGGTGAATGAGTTCAATTCTCAGAATGTTGCTAATGTTGCCGGTGCTTTCGCATCAATGC AGCACTCGGCTCCTCATCTCTTTTCCGAATTAGGAAAAAGGGCAGGTGAGATCATACATACATTCCAGGAGCAGGAGCTTGCTCAGGTATTGTGGGCGTT CGCTGCATTGTTTGAGCCTGCTGATCCTTTGCTCAACTCTTTAGATATTGTGTTTAAGGAGGCAAACCAGTTGGAGTGGTCAGATGTGCCAGCTTCTGAC AAAAATCTCGAAGTGGTGGAGGTTCCGTTGTTGAGGTTAAATAGGGTTCAGCTGGGCAATATTGCATGGTCGTACGCTGTTCTTGGGCAGTTGGACCATA CATTTTTCGCTAATGTCTGGAGAACGATGAGTCGTTTCGAGGACCAAAGGATTTCGGAGCAGTATCGGGAGGATATGATGTTTGCTTCTCAGGTTCGTCT TGTGAACCAATGTCTGAAGCTTGAATATCCGCATCTTGAGATGTCACTTGGAAATGAAGTGGAGGAGAGAATATGTCGAGCAGGAAGAAGCAAGAGGTTC AATCAGAAAATGACTTCTTCTTTCCAGAAGGAAGTCATTCGACTCCTCGTCAGTACTGGACTTGATTGGGTGAACGAATATGTAGTGGATGGATACACTT TGGATGCTGTTGTGTTAGATAAAAAATTAGCTCTTGAGGTTGATGGCCCCACTCACTTCTCAAGGAACACAGGAATGCCTTTGGGGCATACGATGTTGAA ACGACGATACATTTGTGCAGCTGGCTGGAATTTGGTTTCGTTATCCCATCAAGAGTGGGAGGAACTTCAAGGCACGTTCGAACAGGTAGAATATCTGAGG CAGATTCTGGGAAGCCACCTAGGCGGCTGA
AA sequence Show only first row Show all	>Lus10006144 pacid=23176732 polypeptide=Lus10006144 locus=Lus10006144.g ID=Lus10006144.BGIv1.0 annot-version=v1.0 MSEMDRVAEVALTRVNEFNSQNVANVAGAFASMQHSAPHLFSELGKRAGEIIHTFQEQELAQVLWAFAALFEPADPLLNSLDIVFKEANQLEWSDVPASD KNLEVVEVPLLRLNRVQLGNIAWSYAVLGQLDHTFFANVWRTMSRFEDQRISEQYREDMMFASQVRLVNQCLKLEYPHLEMSLGNEVEERICRAGRSKRF NQKMTSSFQKEVIRLLVSTGLDWVNEYVVDGYTLDAVVLDKKLALEVDGPTHFSRNTGMPLGHTMLKRRYICAAGWNLVSLSHQEWEELQGTFEQVEYLR QILGSHLGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31890		ATRAP	RAP (.1)		Lus10006144 [exp]	0	1
					Lus10027663 [exp]	6.3	0.8237
AT5G46420			16S rRNA processing protein Ri...		Lus10011969 [exp]	9.1	0.8374
AT2G17972			unknown protein		Lus10026591 [exp]	9.7	0.8287
AT2G30570		PSBW	photosystem II reaction center...		Lus10018771 [exp]	16.9	0.8350
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10005199 [exp]	22.0	0.8359
AT5G11270		OCP3	overexpressor of cationic pero...		Lus10002029 [exp]	25.7	0.8285
AT2G30570		PSBW	photosystem II reaction center...		Lus10033862 [exp]	34.1	0.8304
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10042931 [exp]	36.5	0.8137
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029404 [exp]	38.7	0.7425
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10027786 [exp]	40.2	0.8249

Compare expression of checked genes

Lus10006144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.