Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43980 318 / 8e-106 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) AT5G16760 85 / 1e-18 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT4G08170 48 / 2e-06 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 48 / 4e-06 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033768 [exp] 530 / 0 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Lus10035811 [exp] 75 / 4e-15 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10038765 [exp] 75 / 4e-15 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10039098 [exp] 76 / 6e-15 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10035662 [exp] 63 / 7e-11 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10032808 [exp] 52 / 3e-07 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 52 / 3e-07 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10037247 [exp] 48 / 4e-06 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 44 / 0.0001 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007500 [exp] 378 / 3e-129 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Potri.007G144701 [exp] 146 / 4e-43 AT2G43980 145 / 1e-41 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Potri.001G140000 [exp] 86 / 9e-19 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.003G094100 [exp] 82 / 3e-17 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.019G047200 [exp] 68 / 8e-13 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.005G149800 [exp] 62 / 1e-10 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.009G084600 [exp] 57 / 3e-09 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF05770 [flax] [poplar] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10006145 pacid=23176724 polypeptide=Lus10006145 locus=Lus10006145.g ID=Lus10006145.BGIv1.0 annot-version=v1.0 ATGAAGCCTTCTCGCAAAGAGGATTTCTCTAAGAGAGGTGCCTTCGCAATCGGTGGAACTCCGAACGGATTGATGTTTCGACCTCTGTCCTTTGATAAGC CTTTGCTACCTCAATTAGAAGGTGTTGACATAATTCTCCATAAAGCAACGGATGAAATAATCACTGTCATTATATTGCTTCTCAATCCTGCTCAGATGGT AGCAGCTATAAGGATGTCACGTTCATATCCTTATAGCTTCTATCCACAAGCTAAAATACATCCTGTAGTGGATCGACTTACGATGCAACAGATTCTGCAT GGTTTGGAGGATCTTAACGAAGGTCGGTGCTGCACCATTAGAGGACCCAATTTCTTAAAGATTGATGACTTCAATGACCTGGAGATGGATCAAAGACTAG CAGGAGCTGAACTATCCTTCCCAAGTATAGTGAAACCTCAAGTGGCTTGTGGTGTCGCTGATGCTCATAGTATGGCGATTGTCTTCAAATCTGAAGATTT CAAGAATCGAAGTGTTCCTCTTCCAGCGGTTGCCCAGGCTAGTATGCATGAGTATGTAAACCATTCATCAACGCTGCTCAAAGCTTATGTCCTCGGCAAG AAGGTTTTCTATGCCGTGAAGAGGTCTGTACCAAATGCTGGTATATTGACGAAAATGGCAGAGAAGAATGGGAGTGGCCCTTTACTCTTTGACAGCTTGA AATCTTTACCAATCAACTCGGACGATGGAGATTCCTCCGGCCGCAACTTACACCACTTTGATATTGAATTAGTTACTGAAGCTGCATACTGGTTGACAAG TAAACTTGACCTCACTGTCTTTGGCTTTGATGTTGGTGAAGATAGCAATGAGCATGTGATCGTAGATGTGAATTACTTTCCATCATTCAAGGAAGTGGGA GATGATGTCGCCATACCGGCCTTCTGGGATGCAGTCGGACACAAATTTGAATCCATGAAAACCTAG
AA sequence Show only first row Show all	>Lus10006145 pacid=23176724 polypeptide=Lus10006145 locus=Lus10006145.g ID=Lus10006145.BGIv1.0 annot-version=v1.0 MKPSRKEDFSKRGAFAIGGTPNGLMFRPLSFDKPLLPQLEGVDIILHKATDEIITVIILLLNPAQMVAAIRMSRSYPYSFYPQAKIHPVVDRLTMQQILH GLEDLNEGRCCTIRGPNFLKIDDFNDLEMDQRLAGAELSFPSIVKPQVACGVADAHSMAIVFKSEDFKNRSVPLPAVAQASMHEYVNHSSTLLKAYVLGK KVFYAVKRSVPNAGILTKMAEKNGSGPLLFDSLKSLPINSDDGDSSGRNLHHFDIELVTEAAYWLTSKLDLTVFGFDVGEDSNEHVIVDVNYFPSFKEVG DDVAIPAFWDAVGHKFESMKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10006145 [exp]	0	1
AT5G35170			adenylate kinase family protei...		Lus10019071 [exp]	1.7	0.8159
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	5.2	0.8451
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10037073 [exp]	5.9	0.8154
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10007614 [exp]	7.1	0.7696
AT3G54460			SNF2 domain-containing protein...		Lus10039526 [exp]	7.2	0.8179
AT1G27510			Protein of unknown function (D...		Lus10042125 [exp]	8.8	0.8060
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	10.4	0.8155
AT3G24110			Calcium-binding EF-hand family...		Lus10007131 [exp]	10.8	0.7150
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10006212 [exp]	14.0	0.7777
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	18.6	0.7735

Compare expression of checked genes

Lus10006145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.