Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 338 / 5e-115 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 299 / 1e-99 O-methyltransferase family protein (.1) AT1G33030 276 / 7e-91 O-methyltransferase family protein (.1) AT1G51990 272 / 4e-89 O-methyltransferase family protein (.1.2) AT1G21100 261 / 8e-85 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G77530 261 / 1e-84 O-methyltransferase family protein (.1) AT1G21120 258 / 1e-83 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1) AT1G21130 258 / 2e-83 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21110 257 / 3e-83 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT5G53810 256 / 7e-83 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005133 [exp] 469 / 2e-166 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002667 [exp] 459 / 1e-162 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10002669 [exp] 431 / 2e-151 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10032929 [exp] 336 / 3e-114 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 334 / 2e-113 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10030188 [exp] 273 / 3e-91 AT5G54160 213 / 9e-68 O-methyltransferase 1 (.1) Lus10009442 [exp] 246 / 4e-79 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10014825 [exp] 214 / 1e-66 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1) Lus10014400 [exp] 209 / 2e-64 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G106600 [exp] 445 / 5e-157 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 440 / 2e-155 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 440 / 3e-155 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 440 / 3e-155 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 439 / 7e-155 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 427 / 1e-150 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 349 / 2e-119 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 348 / 5e-119 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.014G106500 [exp] 331 / 5e-112 AT5G54160 349 / 8e-119 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 302 / 5e-101 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10006146 pacid=23176723 polypeptide=Lus10006146 locus=Lus10006146.g ID=Lus10006146.BGIv1.0 annot-version=v1.0 ATGGATAGTACTAGAGAAGCCAACTTTCAGTTTGCCATGTGGCTTGCAGTCGGCCAAGTGCTGCACAATACCATGCATGCAGTGAACGAGCTCGGAATTT TTGACATCATGTCGGAATCGGGAACTGATGCTAAACTCAGCGCTCCCGAGATCGTGTCAAAATTGGGATCAAAGAACCCTGATGCTCCGGCCATGGTAGA CCGCTTTCTTAGGTTGTTGGCTACTCACTCAATCGTCGACTGCACGGTGGACGGTGCCAGCCCGGGTAGGATATACTATTACACCCTGAACTCTGTTTCC AAATACTTTGTGAGGAATGAGAACAATGGTGTCTCGTTGGCTCCACTTCTGGCCTTGACTCAGGACCATATCCTCGAGAAGAGCTGGTCTCAAGTGAAAG ATGCGGTACTAGAAGGTGGGATACCGTTTGATAGGGCACACGGGTCCCATATTTTTGAGTATCCTAGTCAAGATCTAAGGTTTAATCACACCTTTAACGA TGGGATGCTTAACCAAAGCACTCTCGTCATTAAGGAGGTCCTCGATTCCTACGAAGGATTCGAGAATCTGAAAACGATGGTTGATGTCGGTGGTGGATTA GGACATACTATAAGTGCCATCACTTCCCGGTACCCACATATCCAAGGAATCAATTTTGACTTGCCACACGTCATCAAACAAGCTCCGCCTATCCCTGGGG TGGAACATGTGGCAGGGGATATGTTTGAAACAGTTCCTCAAGCAGAAACAATTTTCCTCAAGTGGGTACTACATGATTGGAGCGACGAAGGTTGTCTGAC GTTGTTGAAGAACTGTTACAAGGCAACTCCAGAAGATGGGAAAGTGATAGTTATGGATGCTGTGGCCCCGGTGATGGCTGAGACAACCATGAGTTCGAAG CTAACCGCTGCATTTAATGTCTTAATGACGATATTATGCCAGGGAGGGAAAGAACGAAGCAAAGATGAATTCATGTCGCTAGCAATTGGGGCAGGATTTA GGACCATCAAGTTTGAATGCTTTGTTTGCAATTTTTGGATCATGGAGTTTCTCAAGTAG
AA sequence Show only first row Show all	>Lus10006146 pacid=23176723 polypeptide=Lus10006146 locus=Lus10006146.g ID=Lus10006146.BGIv1.0 annot-version=v1.0 MDSTREANFQFAMWLAVGQVLHNTMHAVNELGIFDIMSESGTDAKLSAPEIVSKLGSKNPDAPAMVDRFLRLLATHSIVDCTVDGASPGRIYYYTLNSVS KYFVRNENNGVSLAPLLALTQDHILEKSWSQVKDAVLEGGIPFDRAHGSHIFEYPSQDLRFNHTFNDGMLNQSTLVIKEVLDSYEGFENLKTMVDVGGGL GHTISAITSRYPHIQGINFDLPHVIKQAPPIPGVEHVAGDMFETVPQAETIFLKWVLHDWSDEGCLTLLKNCYKATPEDGKVIVMDAVAPVMAETTMSSK LTAAFNVLMTILCQGGKERSKDEFMSLAIGAGFRTIKFECFVCNFWIMEFLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10006146 [exp]	0	1
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	2.4	0.9138
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	3.7	0.8485
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10006678 [exp]	3.7	0.9066
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	4.0	0.8422
AT2G21080			unknown protein		Lus10036448 [exp]	5.3	0.8634
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	7.1	0.8761
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012510 [exp]	7.3	0.7964
AT4G27290			S-locus lectin protein kinase ...		Lus10039767 [exp]	8.1	0.8485
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	11.0	0.8296
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	12.4	0.8489

Compare expression of checked genes

Lus10006146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.